Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10914 | 5' | -62.8 | NC_002794.1 | + | 193652 | 0.66 | 0.702942 |
Target: 5'- cCGGuC-GGCUCcggcgCGCCCCgACCC-CCa -3' miRNA: 3'- -GCCuGuCCGAGa----GCGGGG-UGGGaGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 192350 | 0.66 | 0.693539 |
Target: 5'- gCGGACcucGGcCUC-CGCCgCCGCCgaCCGa -3' miRNA: 3'- -GCCUGu--CC-GAGaGCGG-GGUGGgaGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 190581 | 0.66 | 0.665093 |
Target: 5'- aCGGGUA-GCUCUCGCgCCGCagcuCCUCCa -3' miRNA: 3'- -GCCUGUcCGAGAGCGgGGUG----GGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 190094 | 0.67 | 0.636436 |
Target: 5'- uCGcGCA-GCUCccaCGCCCCGCCgUCCGc -3' miRNA: 3'- -GCcUGUcCGAGa--GCGGGGUGGgAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 189966 | 0.73 | 0.294151 |
Target: 5'- aCGGACGGGCcgcccgCUCGCCCgAcgguCCgUCCGg -3' miRNA: 3'- -GCCUGUCCGa-----GAGCGGGgU----GGgAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 189580 | 0.66 | 0.712292 |
Target: 5'- cCGGccCGGGCcggCGCCCCuuaGCCCgUCCGc -3' miRNA: 3'- -GCCu-GUCCGagaGCGGGG---UGGG-AGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 185580 | 0.67 | 0.617306 |
Target: 5'- aGGGCGcgcGGCUCUCcCuCCCucuguCCCUCCc -3' miRNA: 3'- gCCUGU---CCGAGAGcG-GGGu----GGGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 185291 | 0.68 | 0.560337 |
Target: 5'- cCGGACAGGUcagCaccacccggUCGCCCCAguguCgCCUCCa -3' miRNA: 3'- -GCCUGUCCGa--G---------AGCGGGGU----G-GGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 176211 | 0.69 | 0.504915 |
Target: 5'- gCGGAUggaAGGCUCgcUCGUCUCGCCCggugUCGa -3' miRNA: 3'- -GCCUG---UCCGAG--AGCGGGGUGGGa---GGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 152303 | 0.72 | 0.334476 |
Target: 5'- cCGG-CGGGCUCUCGCaCUACC-UCCGu -3' miRNA: 3'- -GCCuGUCCGAGAGCGgGGUGGgAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 152099 | 0.68 | 0.569755 |
Target: 5'- gGGAUaccgccgucugGGGCUUgcugcgcCGCUCCGCCCUgCCGa -3' miRNA: 3'- gCCUG-----------UCCGAGa------GCGGGGUGGGA-GGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 148894 | 0.73 | 0.300599 |
Target: 5'- uGGGCGGGCUCgucCGCUgucuguUCACCUUCCGc -3' miRNA: 3'- gCCUGUCCGAGa--GCGG------GGUGGGAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 143722 | 0.68 | 0.57921 |
Target: 5'- cCGG-CGGGCg-UCGUCCuCGCCCgCCGg -3' miRNA: 3'- -GCCuGUCCGagAGCGGG-GUGGGaGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 142892 | 0.67 | 0.617306 |
Target: 5'- gCGG-CAGGCg--UGCCCgGCguCCUCCGg -3' miRNA: 3'- -GCCuGUCCGagaGCGGGgUG--GGAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 141530 | 0.76 | 0.207197 |
Target: 5'- uGGGCGGGCUgCUCGCCgaaggcgcgaauccgCCACCCgcggCCGc -3' miRNA: 3'- gCCUGUCCGA-GAGCGG---------------GGUGGGa---GGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 138717 | 0.66 | 0.691653 |
Target: 5'- uGGACucgcgucgagccGGCUCgacgggGUCCCcgGCCCUCCGg -3' miRNA: 3'- gCCUGu-----------CCGAGag----CGGGG--UGGGAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 138545 | 0.66 | 0.702942 |
Target: 5'- uCGG-C-GGCUUuUCGCCuCCGCCCgcUCCGu -3' miRNA: 3'- -GCCuGuCCGAG-AGCGG-GGUGGG--AGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 134934 | 0.66 | 0.712292 |
Target: 5'- gCGGACGGGCUaucuguauguggCgaagccgcgCGaCCCCugCUUCCa -3' miRNA: 3'- -GCCUGUCCGA------------Ga--------GC-GGGGugGGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 134469 | 0.66 | 0.665093 |
Target: 5'- gGGACGGcGCUCUCGUCgCCAgaCCgcgcgacCCGg -3' miRNA: 3'- gCCUGUC-CGAGAGCGG-GGUg-GGa------GGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 130666 | 0.67 | 0.636436 |
Target: 5'- cCGGccGCGGGCUC-CGCCgCGgCCUCg- -3' miRNA: 3'- -GCC--UGUCCGAGaGCGGgGUgGGAGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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