Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10914 | 5' | -62.8 | NC_002794.1 | + | 71548 | 0.77 | 0.187042 |
Target: 5'- uGGACAGGCUCagcUGCUCCACCUgggcgaUCCGg -3' miRNA: 3'- gCCUGUCCGAGa--GCGGGGUGGG------AGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 90196 | 0.66 | 0.674608 |
Target: 5'- gGGGCAcGGUgcccgCGCCuCCGCCCgCCGc -3' miRNA: 3'- gCCUGU-CCGaga--GCGG-GGUGGGaGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 190581 | 0.66 | 0.665093 |
Target: 5'- aCGGGUA-GCUCUCGCgCCGCagcuCCUCCa -3' miRNA: 3'- -GCCUGUcCGAGAGCGgGGUG----GGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 15005 | 0.66 | 0.665093 |
Target: 5'- uCGGGCGgucucggcuGGCUgCUCGUCgUCACCUUCCu -3' miRNA: 3'- -GCCUGU---------CCGA-GAGCGG-GGUGGGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 58079 | 0.67 | 0.646 |
Target: 5'- gGGACGGGCggcccggCGCCCgCGCUCgaCCGc -3' miRNA: 3'- gCCUGUCCGaga----GCGGG-GUGGGa-GGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 134469 | 0.66 | 0.665093 |
Target: 5'- gGGACGGcGCUCUCGUCgCCAgaCCgcgcgacCCGg -3' miRNA: 3'- gCCUGUC-CGAGAGCGG-GGUg-GGa------GGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 52966 | 0.67 | 0.636436 |
Target: 5'- uCGGcCAGGUgCUCgGCCUCGUCCUCCu -3' miRNA: 3'- -GCCuGUCCGaGAG-CGGGGUGGGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 130666 | 0.67 | 0.636436 |
Target: 5'- cCGGccGCGGGCUC-CGCCgCGgCCUCg- -3' miRNA: 3'- -GCC--UGUCCGAGaGCGGgGUgGGAGgc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 3557 | 0.67 | 0.636436 |
Target: 5'- aGGAUgggGGGCggucaaUCGCCCCccaGCCCaCCGa -3' miRNA: 3'- gCCUG---UCCGag----AGCGGGG---UGGGaGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 21398 | 0.66 | 0.673657 |
Target: 5'- uCGGACAccgccGGCuccacgaUCUCGagCCCGUCCUCCGa -3' miRNA: 3'- -GCCUGU-----CCG-------AGAGCg-GGGUGGGAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 68943 | 0.66 | 0.684092 |
Target: 5'- gCGGGCcgcGGCgccggCGCCUCuCCCUCCu -3' miRNA: 3'- -GCCUGu--CCGaga--GCGGGGuGGGAGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 67445 | 0.66 | 0.684092 |
Target: 5'- cCGcuuCGGGCUCcCGCCCgCACUCgCCGa -3' miRNA: 3'- -GCcu-GUCCGAGaGCGGG-GUGGGaGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 189580 | 0.66 | 0.712292 |
Target: 5'- cCGGccCGGGCcggCGCCCCuuaGCCCgUCCGc -3' miRNA: 3'- -GCCu-GUCCGagaGCGGGG---UGGG-AGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 193652 | 0.66 | 0.702942 |
Target: 5'- cCGGuC-GGCUCcggcgCGCCCCgACCC-CCa -3' miRNA: 3'- -GCCuGuCCGAGa----GCGGGG-UGGGaGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 138545 | 0.66 | 0.702942 |
Target: 5'- uCGG-C-GGCUUuUCGCCuCCGCCCgcUCCGu -3' miRNA: 3'- -GCCuGuCCGAG-AGCGG-GGUGGG--AGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 66281 | 0.66 | 0.693539 |
Target: 5'- gCGGAgGGGUcCgagCGCCCguCCgUCCGc -3' miRNA: 3'- -GCCUgUCCGaGa--GCGGGguGGgAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 307 | 0.66 | 0.693539 |
Target: 5'- -cGcCGGGC-C-CGCCCCACCC-CCa -3' miRNA: 3'- gcCuGUCCGaGaGCGGGGUGGGaGGc -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 192350 | 0.66 | 0.693539 |
Target: 5'- gCGGACcucGGcCUC-CGCCgCCGCCgaCCGa -3' miRNA: 3'- -GCCUGu--CC-GAGaGCGG-GGUGGgaGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 138717 | 0.66 | 0.691653 |
Target: 5'- uGGACucgcgucgagccGGCUCgacgggGUCCCcgGCCCUCCGg -3' miRNA: 3'- gCCUGu-----------CCGAGag----CGGGG--UGGGAGGC- -5' |
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10914 | 5' | -62.8 | NC_002794.1 | + | 71891 | 0.66 | 0.693539 |
Target: 5'- uGGACGcGCUCUCGCagcuCCCGcagcCCCUCg- -3' miRNA: 3'- gCCUGUcCGAGAGCG----GGGU----GGGAGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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