miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10914 5' -62.8 NC_002794.1 + 307 0.66 0.693539
Target:  5'- -cGcCGGGC-C-CGCCCCACCC-CCa -3'
miRNA:   3'- gcCuGUCCGaGaGCGGGGUGGGaGGc -5'
10914 5' -62.8 NC_002794.1 + 66281 0.66 0.693539
Target:  5'- gCGGAgGGGUcCgagCGCCCguCCgUCCGc -3'
miRNA:   3'- -GCCUgUCCGaGa--GCGGGguGGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 138545 0.66 0.702942
Target:  5'- uCGG-C-GGCUUuUCGCCuCCGCCCgcUCCGu -3'
miRNA:   3'- -GCCuGuCCGAG-AGCGG-GGUGGG--AGGC- -5'
10914 5' -62.8 NC_002794.1 + 193652 0.66 0.702942
Target:  5'- cCGGuC-GGCUCcggcgCGCCCCgACCC-CCa -3'
miRNA:   3'- -GCCuGuCCGAGa----GCGGGG-UGGGaGGc -5'
10914 5' -62.8 NC_002794.1 + 189580 0.66 0.712292
Target:  5'- cCGGccCGGGCcggCGCCCCuuaGCCCgUCCGc -3'
miRNA:   3'- -GCCu-GUCCGagaGCGGGG---UGGG-AGGC- -5'
10914 5' -62.8 NC_002794.1 + 15005 0.66 0.665093
Target:  5'- uCGGGCGgucucggcuGGCUgCUCGUCgUCACCUUCCu -3'
miRNA:   3'- -GCCUGU---------CCGA-GAGCGG-GGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 58079 0.67 0.646
Target:  5'- gGGACGGGCggcccggCGCCCgCGCUCgaCCGc -3'
miRNA:   3'- gCCUGUCCGaga----GCGGG-GUGGGa-GGC- -5'
10914 5' -62.8 NC_002794.1 + 48532 0.67 0.607752
Target:  5'- aCGcACAGGCUCgggUCGgCCgACCaCUCCGc -3'
miRNA:   3'- -GCcUGUCCGAG---AGCgGGgUGG-GAGGC- -5'
10914 5' -62.8 NC_002794.1 + 109550 0.67 0.598214
Target:  5'- gCGGACcGGUcuacCUCGCCCCccacgcgggGCCC-CCGu -3'
miRNA:   3'- -GCCUGuCCGa---GAGCGGGG---------UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 185580 0.67 0.617306
Target:  5'- aGGGCGcgcGGCUCUCcCuCCCucuguCCCUCCc -3'
miRNA:   3'- gCCUGU---CCGAGAGcG-GGGu----GGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 142892 0.67 0.617306
Target:  5'- gCGG-CAGGCg--UGCCCgGCguCCUCCGg -3'
miRNA:   3'- -GCCuGUCCGagaGCGGGgUG--GGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 19415 0.67 0.617306
Target:  5'- cCGGAuCGGGCg--CGCCCU--CCUCCGc -3'
miRNA:   3'- -GCCU-GUCCGagaGCGGGGugGGAGGC- -5'
10914 5' -62.8 NC_002794.1 + 115002 0.67 0.626869
Target:  5'- gCGGAgCA-GCUCUCGCaCCCGCCgCgcgCCc -3'
miRNA:   3'- -GCCU-GUcCGAGAGCG-GGGUGG-Ga--GGc -5'
10914 5' -62.8 NC_002794.1 + 1175 0.67 0.626869
Target:  5'- uGGGCgGGGUUC-CG-CCCACCCaCCGg -3'
miRNA:   3'- gCCUG-UCCGAGaGCgGGGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 190094 0.67 0.636436
Target:  5'- uCGcGCA-GCUCccaCGCCCCGCCgUCCGc -3'
miRNA:   3'- -GCcUGUcCGAGa--GCGGGGUGGgAGGC- -5'
10914 5' -62.8 NC_002794.1 + 62504 0.67 0.626869
Target:  5'- gCGGGCGGcGC-CgccggCGCCuCCGCCCaCCGu -3'
miRNA:   3'- -GCCUGUC-CGaGa----GCGG-GGUGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 3557 0.67 0.636436
Target:  5'- aGGAUgggGGGCggucaaUCGCCCCccaGCCCaCCGa -3'
miRNA:   3'- gCCUG---UCCGag----AGCGGGG---UGGGaGGC- -5'
10914 5' -62.8 NC_002794.1 + 130666 0.67 0.636436
Target:  5'- cCGGccGCGGGCUC-CGCCgCGgCCUCg- -3'
miRNA:   3'- -GCC--UGUCCGAGaGCGGgGUgGGAGgc -5'
10914 5' -62.8 NC_002794.1 + 52966 0.67 0.636436
Target:  5'- uCGGcCAGGUgCUCgGCCUCGUCCUCCu -3'
miRNA:   3'- -GCCuGUCCGaGAG-CGGGGUGGGAGGc -5'
10914 5' -62.8 NC_002794.1 + 134469 0.66 0.665093
Target:  5'- gGGACGGcGCUCUCGUCgCCAgaCCgcgcgacCCGg -3'
miRNA:   3'- gCCUGUC-CGAGAGCGG-GGUg-GGa------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.