miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10915 3' -53.1 NC_002794.1 + 183602 0.66 0.982144
Target:  5'- ----cGGAGGggGgCCGcgcgcggccGGCGCCCc -3'
miRNA:   3'- uuuuuUCUCCuuCaGGCu--------CCGCGGGu -5'
10915 3' -53.1 NC_002794.1 + 191038 0.66 0.980019
Target:  5'- -------cGGAcgcaccAGUugcCCGGGGCGCCCAg -3'
miRNA:   3'- uuuuuucuCCU------UCA---GGCUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 41803 0.66 0.980019
Target:  5'- --cGAAGcaGAcGUCCagcGAGGCGCCCAg -3'
miRNA:   3'- uuuUUUCucCUuCAGG---CUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 146676 0.66 0.972514
Target:  5'- --cGAGGAGGAcGUCUc-GGCGCUCGa -3'
miRNA:   3'- uuuUUUCUCCUuCAGGcuCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 42508 0.67 0.96961
Target:  5'- uGAGAAAGAGcGAgagagAGcCCGAGGgagGCCCGg -3'
miRNA:   3'- -UUUUUUCUC-CU-----UCaGGCUCCg--CGGGU- -5'
10915 3' -53.1 NC_002794.1 + 95094 0.67 0.96961
Target:  5'- -----cGAGGAgcuGG-CCGcGGUGCCCAa -3'
miRNA:   3'- uuuuuuCUCCU---UCaGGCuCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 87496 0.67 0.966494
Target:  5'- gAGGGAAGGGGggGUuuGGGGgGgUUAg -3'
miRNA:   3'- -UUUUUUCUCCuuCAggCUCCgCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 66636 0.67 0.9596
Target:  5'- ---cGGGAGGAGGUCCGuccGGGgGCaUCGg -3'
miRNA:   3'- uuuuUUCUCCUUCAGGC---UCCgCG-GGU- -5'
10915 3' -53.1 NC_002794.1 + 109943 0.67 0.9596
Target:  5'- -uGGGGGucAGGGAGggCCGGGGgGUCCAg -3'
miRNA:   3'- uuUUUUC--UCCUUCa-GGCUCCgCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1482 0.67 0.955811
Target:  5'- ------uAGGAAGUUCGAGGCGgcgaCCGg -3'
miRNA:   3'- uuuuuucUCCUUCAGGCUCCGCg---GGU- -5'
10915 3' -53.1 NC_002794.1 + 126688 0.67 0.955811
Target:  5'- cGAAucGGGGAGGga-GGGGCGCCgCGg -3'
miRNA:   3'- uUUUuuCUCCUUCaggCUCCGCGG-GU- -5'
10915 3' -53.1 NC_002794.1 + 32635 0.67 0.955811
Target:  5'- --cGAAGAGGggGgcgacgaCCGGGGCGacggcgccgucCCCGu -3'
miRNA:   3'- uuuUUUCUCCuuCa------GGCUCCGC-----------GGGU- -5'
10915 3' -53.1 NC_002794.1 + 145942 0.67 0.951787
Target:  5'- -cGAGAGcgguucGGGAGUCgCGA-GCGCCCAg -3'
miRNA:   3'- uuUUUUCu-----CCUUCAG-GCUcCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 143261 0.68 0.947525
Target:  5'- ---cAGGAGGAAGgcCCGGcccGGCGCCg- -3'
miRNA:   3'- uuuuUUCUCCUUCa-GGCU---CCGCGGgu -5'
10915 3' -53.1 NC_002794.1 + 121348 0.68 0.947525
Target:  5'- gAGAAAccGGGAAGUUCGucgacGGCGUCCGa -3'
miRNA:   3'- -UUUUUucUCCUUCAGGCu----CCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 118127 0.68 0.947525
Target:  5'- cGAAGAucucGGGGAAGU-CGGGGUGCaCCGu -3'
miRNA:   3'- -UUUUUu---CUCCUUCAgGCUCCGCG-GGU- -5'
10915 3' -53.1 NC_002794.1 + 55409 0.68 0.947525
Target:  5'- -----cGAGGcGG-CCGAGGCGaCCCc -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGC-GGGu -5'
10915 3' -53.1 NC_002794.1 + 138320 0.68 0.943021
Target:  5'- --cGGGGAGGAGGUCUucGaGCGCUCGc -3'
miRNA:   3'- uuuUUUCUCCUUCAGGcuC-CGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 55382 0.68 0.938273
Target:  5'- -----cGAGGcGG-CCGAGGCGgCCGa -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 121759 0.68 0.938273
Target:  5'- --cGGAGAuGGcGGUgcCCGAGGCGCCg- -3'
miRNA:   3'- uuuUUUCU-CCuUCA--GGCUCCGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.