Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 10915 | 3' | -53.1 | NC_002794.1 | + | 32635 | 0.67 | 0.955811 |
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Target: 5'- --cGAAGAGGggGgcgacgaCCGGGGCGacggcgccgucCCCGu -3' miRNA: 3'- uuuUUUCUCCuuCa------GGCUCCGC-----------GGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 109943 | 0.67 | 0.9596 |
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Target: 5'- -uGGGGGucAGGGAGggCCGGGGgGUCCAg -3' miRNA: 3'- uuUUUUC--UCCUUCa-GGCUCCgCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 126688 | 0.67 | 0.955811 |
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Target: 5'- cGAAucGGGGAGGga-GGGGCGCCgCGg -3' miRNA: 3'- uUUUuuCUCCUUCaggCUCCGCGG-GU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 145942 | 0.67 | 0.951787 |
|
Target: 5'- -cGAGAGcgguucGGGAGUCgCGA-GCGCCCAg -3' miRNA: 3'- uuUUUUCu-----CCUUCAG-GCUcCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 1482 | 0.67 | 0.955811 |
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Target: 5'- ------uAGGAAGUUCGAGGCGgcgaCCGg -3' miRNA: 3'- uuuuuucUCCUUCAGGCUCCGCg---GGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 41803 | 0.66 | 0.980019 |
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Target: 5'- --cGAAGcaGAcGUCCagcGAGGCGCCCAg -3' miRNA: 3'- uuuUUUCucCUuCAGG---CUCCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 146676 | 0.66 | 0.972514 |
|
Target: 5'- --cGAGGAGGAcGUCUc-GGCGCUCGa -3' miRNA: 3'- uuuUUUCUCCUuCAGGcuCCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 183602 | 0.66 | 0.982144 |
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Target: 5'- ----cGGAGGggGgCCGcgcgcggccGGCGCCCc -3' miRNA: 3'- uuuuuUCUCCuuCaGGCu--------CCGCGGGu -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 191038 | 0.66 | 0.980019 |
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Target: 5'- -------cGGAcgcaccAGUugcCCGGGGCGCCCAg -3' miRNA: 3'- uuuuuucuCCU------UCA---GGCUCCGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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