Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10915 | 3' | -53.1 | NC_002794.1 | + | 1664 | 1.06 | 0.009057 |
Target: 5'- cAAAAAAGAGGAAGUCCGAGGCGCCCAc -3' miRNA: 3'- -UUUUUUCUCCUUCAGGCUCCGCGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1601 | 1.06 | 0.009057 |
Target: 5'- cAAAAAAGAGGAAGUCCGAGGCGCCCAc -3' miRNA: 3'- -UUUUUUCUCCUUCAGGCUCCGCGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1998 | 0.97 | 0.033876 |
Target: 5'- cAAAAAuGAGGAAGUCCGAGGCGCCCGc -3' miRNA: 3'- -UUUUUuCUCCUUCAGGCUCCGCGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1727 | 0.95 | 0.049954 |
Target: 5'- cAAAAAAGAGGAAGUCCGAGGCaCCCAu -3' miRNA: 3'- -UUUUUUCUCCUUCAGGCUCCGcGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1936 | 0.93 | 0.067594 |
Target: 5'- cAAAAAAGAaGAAGUCCGAGGCGCCCGc -3' miRNA: 3'- -UUUUUUCUcCUUCAGGCUCCGCGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1538 | 0.86 | 0.181012 |
Target: 5'- cAAAAAuGAGGAAGUCCGAGGCaCCCGc -3' miRNA: 3'- -UUUUUuCUCCUUCAGGCUCCGcGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 2248 | 0.83 | 0.250704 |
Target: 5'- cAAAAcGAGGAAGUCCGAGGCGaCCGc -3' miRNA: 3'- uUUUUuCUCCUUCAGGCUCCGCgGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 115869 | 0.78 | 0.471717 |
Target: 5'- -----cGAGG-GGUCCGGGGCGUCCGg -3' miRNA: 3'- uuuuuuCUCCuUCAGGCUCCGCGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1807 | 0.76 | 0.55089 |
Target: 5'- ------uAGGAAGUCCGAGGCaCCCGu -3' miRNA: 3'- uuuuuucUCCUUCAGGCUCCGcGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1880 | 0.76 | 0.561104 |
Target: 5'- ------uAGGAAGUCCGAGGCaCCCGc -3' miRNA: 3'- uuuuuucUCCUUCAGGCUCCGcGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 84765 | 0.76 | 0.57137 |
Target: 5'- ---cGAGAGGGccGUCCGAGGCccgGCCCGg -3' miRNA: 3'- uuuuUUCUCCUu-CAGGCUCCG---CGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 108390 | 0.74 | 0.695858 |
Target: 5'- cGGGGAGcGGAGGcUCCGGcggcGGCGCCCAc -3' miRNA: 3'- uUUUUUCuCCUUC-AGGCU----CCGCGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 66278 | 0.73 | 0.72634 |
Target: 5'- cGAGcGGAGG-GGUCCGA-GCGCCCGu -3' miRNA: 3'- uUUUuUCUCCuUCAGGCUcCGCGGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 2061 | 0.73 | 0.736345 |
Target: 5'- cAAAAcAGAGGAAGUCCGAGacgacCGCCg- -3' miRNA: 3'- -UUUUuUCUCCUUCAGGCUCc----GCGGgu -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 136160 | 0.73 | 0.736345 |
Target: 5'- --cGAAGAGGAAGUCUucGGUGCUCu -3' miRNA: 3'- uuuUUUCUCCUUCAGGcuCCGCGGGu -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 108362 | 0.72 | 0.784765 |
Target: 5'- gGGAGcGGAGGAGGaCCG-GGCGCCgGa -3' miRNA: 3'- -UUUUuUCUCCUUCaGGCuCCGCGGgU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 1436 | 0.72 | 0.79406 |
Target: 5'- ---cGGGAGGggGaCCGGGGCGCg-- -3' miRNA: 3'- uuuuUUCUCCuuCaGGCUCCGCGggu -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 10049 | 0.71 | 0.812187 |
Target: 5'- cAGAuGAGAGGAGccaCCGAGaGCGCCCc -3' miRNA: 3'- -UUUuUUCUCCUUca-GGCUC-CGCGGGu -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 2195 | 0.7 | 0.854394 |
Target: 5'- cAAAAAuGGGGAAGUCCGAGaCGaCCGg -3' miRNA: 3'- -UUUUUuCUCCUUCAGGCUCcGCgGGU- -5' |
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10915 | 3' | -53.1 | NC_002794.1 | + | 2134 | 0.7 | 0.862238 |
Target: 5'- cAAAAuGAGGAAGUCCGAGaCGaCCGu -3' miRNA: 3'- uUUUUuCUCCUUCAGGCUCcGCgGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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