miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10915 3' -53.1 NC_002794.1 + 72015 0.7 0.869868
Target:  5'- -----cGAGGAAG-CCGAGGuCGCgCAg -3'
miRNA:   3'- uuuuuuCUCCUUCaGGCUCC-GCGgGU- -5'
10915 3' -53.1 NC_002794.1 + 72427 0.7 0.884456
Target:  5'- -cGGAGGAGGAgccggcggagGGaCCGGcGGCGCCCc -3'
miRNA:   3'- uuUUUUCUCCU----------UCaGGCU-CCGCGGGu -5'
10915 3' -53.1 NC_002794.1 + 99371 0.69 0.897458
Target:  5'- aAGAGAAGcGGGAGGUgCCGAcgaugguGGCGCCg- -3'
miRNA:   3'- -UUUUUUC-UCCUUCA-GGCU-------CCGCGGgu -5'
10915 3' -53.1 NC_002794.1 + 148187 0.69 0.904592
Target:  5'- gGAAGGAG-GGggGUCUccGGCGCCg- -3'
miRNA:   3'- -UUUUUUCuCCuuCAGGcuCCGCGGgu -5'
10915 3' -53.1 NC_002794.1 + 142949 0.69 0.910822
Target:  5'- ---cGAGGGGAAGUCgGcGGCGUCgAg -3'
miRNA:   3'- uuuuUUCUCCUUCAGgCuCCGCGGgU- -5'
10915 3' -53.1 NC_002794.1 + 109436 0.68 0.928035
Target:  5'- -----uGAGGGAccgCCGGGGuCGCCCGc -3'
miRNA:   3'- uuuuuuCUCCUUca-GGCUCC-GCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 144807 0.68 0.928035
Target:  5'- -----cGAGGAGuUCCG-GGCGUCCGu -3'
miRNA:   3'- uuuuuuCUCCUUcAGGCuCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 147063 0.68 0.933278
Target:  5'- --uAAGGAcGGAG-CCGcGGGCGCCCGg -3'
miRNA:   3'- uuuUUUCUcCUUCaGGC-UCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 55382 0.68 0.938273
Target:  5'- -----cGAGGcGG-CCGAGGCGgCCGa -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 121759 0.68 0.938273
Target:  5'- --cGGAGAuGGcGGUgcCCGAGGCGCCg- -3'
miRNA:   3'- uuuUUUCU-CCuUCA--GGCUCCGCGGgu -5'
10915 3' -53.1 NC_002794.1 + 55355 0.68 0.938273
Target:  5'- -----cGAGGcGG-CCGAGGCGgCCGa -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 138320 0.68 0.943021
Target:  5'- --cGGGGAGGAGGUCUucGaGCGCUCGc -3'
miRNA:   3'- uuuUUUCUCCUUCAGGcuC-CGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 143261 0.68 0.947525
Target:  5'- ---cAGGAGGAAGgcCCGGcccGGCGCCg- -3'
miRNA:   3'- uuuuUUCUCCUUCa-GGCU---CCGCGGgu -5'
10915 3' -53.1 NC_002794.1 + 121348 0.68 0.947525
Target:  5'- gAGAAAccGGGAAGUUCGucgacGGCGUCCGa -3'
miRNA:   3'- -UUUUUucUCCUUCAGGCu----CCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 55409 0.68 0.947525
Target:  5'- -----cGAGGcGG-CCGAGGCGaCCCc -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGC-GGGu -5'
10915 3' -53.1 NC_002794.1 + 118127 0.68 0.947525
Target:  5'- cGAAGAucucGGGGAAGU-CGGGGUGCaCCGu -3'
miRNA:   3'- -UUUUUu---CUCCUUCAgGCUCCGCG-GGU- -5'
10915 3' -53.1 NC_002794.1 + 145942 0.67 0.951787
Target:  5'- -cGAGAGcgguucGGGAGUCgCGA-GCGCCCAg -3'
miRNA:   3'- uuUUUUCu-----CCUUCAG-GCUcCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1482 0.67 0.955811
Target:  5'- ------uAGGAAGUUCGAGGCGgcgaCCGg -3'
miRNA:   3'- uuuuuucUCCUUCAGGCUCCGCg---GGU- -5'
10915 3' -53.1 NC_002794.1 + 126688 0.67 0.955811
Target:  5'- cGAAucGGGGAGGga-GGGGCGCCgCGg -3'
miRNA:   3'- uUUUuuCUCCUUCaggCUCCGCGG-GU- -5'
10915 3' -53.1 NC_002794.1 + 32635 0.67 0.955811
Target:  5'- --cGAAGAGGggGgcgacgaCCGGGGCGacggcgccgucCCCGu -3'
miRNA:   3'- uuuUUUCUCCuuCa------GGCUCCGC-----------GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.