miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10915 3' -53.1 NC_002794.1 + 1436 0.72 0.79406
Target:  5'- ---cGGGAGGggGaCCGGGGCGCg-- -3'
miRNA:   3'- uuuuUUCUCCuuCaGGCUCCGCGggu -5'
10915 3' -53.1 NC_002794.1 + 1482 0.67 0.955811
Target:  5'- ------uAGGAAGUUCGAGGCGgcgaCCGg -3'
miRNA:   3'- uuuuuucUCCUUCAGGCUCCGCg---GGU- -5'
10915 3' -53.1 NC_002794.1 + 1538 0.86 0.181012
Target:  5'- cAAAAAuGAGGAAGUCCGAGGCaCCCGc -3'
miRNA:   3'- -UUUUUuCUCCUUCAGGCUCCGcGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1601 1.06 0.009057
Target:  5'- cAAAAAAGAGGAAGUCCGAGGCGCCCAc -3'
miRNA:   3'- -UUUUUUCUCCUUCAGGCUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1664 1.06 0.009057
Target:  5'- cAAAAAAGAGGAAGUCCGAGGCGCCCAc -3'
miRNA:   3'- -UUUUUUCUCCUUCAGGCUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1727 0.95 0.049954
Target:  5'- cAAAAAAGAGGAAGUCCGAGGCaCCCAu -3'
miRNA:   3'- -UUUUUUCUCCUUCAGGCUCCGcGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1807 0.76 0.55089
Target:  5'- ------uAGGAAGUCCGAGGCaCCCGu -3'
miRNA:   3'- uuuuuucUCCUUCAGGCUCCGcGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1880 0.76 0.561104
Target:  5'- ------uAGGAAGUCCGAGGCaCCCGc -3'
miRNA:   3'- uuuuuucUCCUUCAGGCUCCGcGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1936 0.93 0.067594
Target:  5'- cAAAAAAGAaGAAGUCCGAGGCGCCCGc -3'
miRNA:   3'- -UUUUUUCUcCUUCAGGCUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 1998 0.97 0.033876
Target:  5'- cAAAAAuGAGGAAGUCCGAGGCGCCCGc -3'
miRNA:   3'- -UUUUUuCUCCUUCAGGCUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 2061 0.73 0.736345
Target:  5'- cAAAAcAGAGGAAGUCCGAGacgacCGCCg- -3'
miRNA:   3'- -UUUUuUCUCCUUCAGGCUCc----GCGGgu -5'
10915 3' -53.1 NC_002794.1 + 2134 0.7 0.862238
Target:  5'- cAAAAuGAGGAAGUCCGAGaCGaCCGu -3'
miRNA:   3'- uUUUUuCUCCUUCAGGCUCcGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 2195 0.7 0.854394
Target:  5'- cAAAAAuGGGGAAGUCCGAGaCGaCCGg -3'
miRNA:   3'- -UUUUUuCUCCUUCAGGCUCcGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 2248 0.83 0.250704
Target:  5'- cAAAAcGAGGAAGUCCGAGGCGaCCGc -3'
miRNA:   3'- uUUUUuCUCCUUCAGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 10049 0.71 0.812187
Target:  5'- cAGAuGAGAGGAGccaCCGAGaGCGCCCc -3'
miRNA:   3'- -UUUuUUCUCCUUca-GGCUC-CGCGGGu -5'
10915 3' -53.1 NC_002794.1 + 32635 0.67 0.955811
Target:  5'- --cGAAGAGGggGgcgacgaCCGGGGCGacggcgccgucCCCGu -3'
miRNA:   3'- uuuUUUCUCCuuCa------GGCUCCGC-----------GGGU- -5'
10915 3' -53.1 NC_002794.1 + 41803 0.66 0.980019
Target:  5'- --cGAAGcaGAcGUCCagcGAGGCGCCCAg -3'
miRNA:   3'- uuuUUUCucCUuCAGG---CUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 42508 0.67 0.96961
Target:  5'- uGAGAAAGAGcGAgagagAGcCCGAGGgagGCCCGg -3'
miRNA:   3'- -UUUUUUCUC-CU-----UCaGGCUCCg--CGGGU- -5'
10915 3' -53.1 NC_002794.1 + 55355 0.68 0.938273
Target:  5'- -----cGAGGcGG-CCGAGGCGgCCGa -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 55382 0.68 0.938273
Target:  5'- -----cGAGGcGG-CCGAGGCGgCCGa -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.