Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10915 | 3' | -53.1 | NC_002794.1 | + | 142949 | 0.69 | 0.910822 |
|
Target: 5'- ---cGAGGGGAAGUCgGcGGCGUCgAg -3' miRNA: 3'- uuuuUUCUCCUUCAGgCuCCGCGGgU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 143261 | 0.68 | 0.947525 |
|
Target: 5'- ---cAGGAGGAAGgcCCGGcccGGCGCCg- -3' miRNA: 3'- uuuuUUCUCCUUCa-GGCU---CCGCGGgu -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 144807 | 0.68 | 0.928035 |
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Target: 5'- -----cGAGGAGuUCCG-GGCGUCCGu -3' miRNA: 3'- uuuuuuCUCCUUcAGGCuCCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 145942 | 0.67 | 0.951787 |
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Target: 5'- -cGAGAGcgguucGGGAGUCgCGA-GCGCCCAg -3' miRNA: 3'- uuUUUUCu-----CCUUCAG-GCUcCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 146676 | 0.66 | 0.972514 |
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Target: 5'- --cGAGGAGGAcGUCUc-GGCGCUCGa -3' miRNA: 3'- uuuUUUCUCCUuCAGGcuCCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 147063 | 0.68 | 0.933278 |
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Target: 5'- --uAAGGAcGGAG-CCGcGGGCGCCCGg -3' miRNA: 3'- uuuUUUCUcCUUCaGGC-UCCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 148187 | 0.69 | 0.904592 |
|
Target: 5'- gGAAGGAG-GGggGUCUccGGCGCCg- -3' miRNA: 3'- -UUUUUUCuCCuuCAGGcuCCGCGGgu -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 183602 | 0.66 | 0.982144 |
|
Target: 5'- ----cGGAGGggGgCCGcgcgcggccGGCGCCCc -3' miRNA: 3'- uuuuuUCUCCuuCaGGCu--------CCGCGGGu -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 191038 | 0.66 | 0.980019 |
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Target: 5'- -------cGGAcgcaccAGUugcCCGGGGCGCCCAg -3' miRNA: 3'- uuuuuucuCCU------UCA---GGCUCCGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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