miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10915 3' -53.1 NC_002794.1 + 99371 0.69 0.897458
Target:  5'- aAGAGAAGcGGGAGGUgCCGAcgaugguGGCGCCg- -3'
miRNA:   3'- -UUUUUUC-UCCUUCA-GGCU-------CCGCGGgu -5'
10915 3' -53.1 NC_002794.1 + 95094 0.67 0.96961
Target:  5'- -----cGAGGAgcuGG-CCGcGGUGCCCAa -3'
miRNA:   3'- uuuuuuCUCCU---UCaGGCuCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 87496 0.67 0.966494
Target:  5'- gAGGGAAGGGGggGUuuGGGGgGgUUAg -3'
miRNA:   3'- -UUUUUUCUCCuuCAggCUCCgCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 84765 0.76 0.57137
Target:  5'- ---cGAGAGGGccGUCCGAGGCccgGCCCGg -3'
miRNA:   3'- uuuuUUCUCCUu-CAGGCUCCG---CGGGU- -5'
10915 3' -53.1 NC_002794.1 + 72427 0.7 0.884456
Target:  5'- -cGGAGGAGGAgccggcggagGGaCCGGcGGCGCCCc -3'
miRNA:   3'- uuUUUUCUCCU----------UCaGGCU-CCGCGGGu -5'
10915 3' -53.1 NC_002794.1 + 72015 0.7 0.869868
Target:  5'- -----cGAGGAAG-CCGAGGuCGCgCAg -3'
miRNA:   3'- uuuuuuCUCCUUCaGGCUCC-GCGgGU- -5'
10915 3' -53.1 NC_002794.1 + 66636 0.67 0.9596
Target:  5'- ---cGGGAGGAGGUCCGuccGGGgGCaUCGg -3'
miRNA:   3'- uuuuUUCUCCUUCAGGC---UCCgCG-GGU- -5'
10915 3' -53.1 NC_002794.1 + 66278 0.73 0.72634
Target:  5'- cGAGcGGAGG-GGUCCGA-GCGCCCGu -3'
miRNA:   3'- uUUUuUCUCCuUCAGGCUcCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 55409 0.68 0.947525
Target:  5'- -----cGAGGcGG-CCGAGGCGaCCCc -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGC-GGGu -5'
10915 3' -53.1 NC_002794.1 + 55382 0.68 0.938273
Target:  5'- -----cGAGGcGG-CCGAGGCGgCCGa -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 55355 0.68 0.938273
Target:  5'- -----cGAGGcGG-CCGAGGCGgCCGa -3'
miRNA:   3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 42508 0.67 0.96961
Target:  5'- uGAGAAAGAGcGAgagagAGcCCGAGGgagGCCCGg -3'
miRNA:   3'- -UUUUUUCUC-CU-----UCaGGCUCCg--CGGGU- -5'
10915 3' -53.1 NC_002794.1 + 41803 0.66 0.980019
Target:  5'- --cGAAGcaGAcGUCCagcGAGGCGCCCAg -3'
miRNA:   3'- uuuUUUCucCUuCAGG---CUCCGCGGGU- -5'
10915 3' -53.1 NC_002794.1 + 32635 0.67 0.955811
Target:  5'- --cGAAGAGGggGgcgacgaCCGGGGCGacggcgccgucCCCGu -3'
miRNA:   3'- uuuUUUCUCCuuCa------GGCUCCGC-----------GGGU- -5'
10915 3' -53.1 NC_002794.1 + 10049 0.71 0.812187
Target:  5'- cAGAuGAGAGGAGccaCCGAGaGCGCCCc -3'
miRNA:   3'- -UUUuUUCUCCUUca-GGCUC-CGCGGGu -5'
10915 3' -53.1 NC_002794.1 + 2248 0.83 0.250704
Target:  5'- cAAAAcGAGGAAGUCCGAGGCGaCCGc -3'
miRNA:   3'- uUUUUuCUCCUUCAGGCUCCGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 2195 0.7 0.854394
Target:  5'- cAAAAAuGGGGAAGUCCGAGaCGaCCGg -3'
miRNA:   3'- -UUUUUuCUCCUUCAGGCUCcGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 2134 0.7 0.862238
Target:  5'- cAAAAuGAGGAAGUCCGAGaCGaCCGu -3'
miRNA:   3'- uUUUUuCUCCUUCAGGCUCcGCgGGU- -5'
10915 3' -53.1 NC_002794.1 + 2061 0.73 0.736345
Target:  5'- cAAAAcAGAGGAAGUCCGAGacgacCGCCg- -3'
miRNA:   3'- -UUUUuUCUCCUUCAGGCUCc----GCGGgu -5'
10915 3' -53.1 NC_002794.1 + 1998 0.97 0.033876
Target:  5'- cAAAAAuGAGGAAGUCCGAGGCGCCCGc -3'
miRNA:   3'- -UUUUUuCUCCUUCAGGCUCCGCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.