Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10915 | 3' | -53.1 | NC_002794.1 | + | 138320 | 0.68 | 0.943021 |
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Target: 5'- --cGGGGAGGAGGUCUucGaGCGCUCGc -3' miRNA: 3'- uuuUUUCUCCUUCAGGcuC-CGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 121759 | 0.68 | 0.938273 |
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Target: 5'- --cGGAGAuGGcGGUgcCCGAGGCGCCg- -3' miRNA: 3'- uuuUUUCU-CCuUCA--GGCUCCGCGGgu -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 55382 | 0.68 | 0.938273 |
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Target: 5'- -----cGAGGcGG-CCGAGGCGgCCGa -3' miRNA: 3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 55355 | 0.68 | 0.938273 |
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Target: 5'- -----cGAGGcGG-CCGAGGCGgCCGa -3' miRNA: 3'- uuuuuuCUCCuUCaGGCUCCGCgGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 143261 | 0.68 | 0.947525 |
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Target: 5'- ---cAGGAGGAAGgcCCGGcccGGCGCCg- -3' miRNA: 3'- uuuuUUCUCCUUCa-GGCU---CCGCGGgu -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 121348 | 0.68 | 0.947525 |
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Target: 5'- gAGAAAccGGGAAGUUCGucgacGGCGUCCGa -3' miRNA: 3'- -UUUUUucUCCUUCAGGCu----CCGCGGGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 118127 | 0.68 | 0.947525 |
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Target: 5'- cGAAGAucucGGGGAAGU-CGGGGUGCaCCGu -3' miRNA: 3'- -UUUUUu---CUCCUUCAgGCUCCGCG-GGU- -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 55409 | 0.68 | 0.947525 |
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Target: 5'- -----cGAGGcGG-CCGAGGCGaCCCc -3' miRNA: 3'- uuuuuuCUCCuUCaGGCUCCGC-GGGu -5' |
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| 10915 | 3' | -53.1 | NC_002794.1 | + | 183602 | 0.66 | 0.982144 |
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Target: 5'- ----cGGAGGggGgCCGcgcgcggccGGCGCCCc -3' miRNA: 3'- uuuuuUCUCCuuCaGGCu--------CCGCGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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