miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 189786 0.66 0.989214
Target:  5'- gCGGGAUGCGgaaaucGCCGuCGAACcccgGCGGGcGCg -3'
miRNA:   3'- -GCUCUGCGC------CGGC-GCUUG----UGCUUuUG- -5'
10917 3' -53.3 NC_002794.1 + 51176 0.66 0.989214
Target:  5'- --cGACGCGGCCGUucGC-CGAu--- -3'
miRNA:   3'- gcuCUGCGCCGGCGcuUGuGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 18498 0.66 0.989214
Target:  5'- aGcAGuagaGGCCGCGAACGCGAc--- -3'
miRNA:   3'- gC-UCugcgCCGGCGCUUGUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 118268 0.66 0.989214
Target:  5'- cCGGGGCgGCGG-CGCcGGCGuCGggGACc -3'
miRNA:   3'- -GCUCUG-CGCCgGCGcUUGU-GCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 111167 0.66 0.989214
Target:  5'- -cAGACGCGGUgcaggGCGcGCACGAAcuCg -3'
miRNA:   3'- gcUCUGCGCCGg----CGCuUGUGCUUuuG- -5'
10917 3' -53.3 NC_002794.1 + 84003 0.66 0.989214
Target:  5'- aCGGGcACGacgGGCaCGaCGGGCACGAGcGACg -3'
miRNA:   3'- -GCUC-UGCg--CCG-GC-GCUUGUGCUU-UUG- -5'
10917 3' -53.3 NC_002794.1 + 121391 0.66 0.989214
Target:  5'- cCGGGAcCGCGGCCgGCGccggGAcCGCGAc--- -3'
miRNA:   3'- -GCUCU-GCGCCGG-CGC----UU-GUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 146594 0.66 0.989214
Target:  5'- --cGACGaaGCUGuCGAGCgACGAAGGCg -3'
miRNA:   3'- gcuCUGCgcCGGC-GCUUG-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 153358 0.66 0.989214
Target:  5'- -aGGACGCGGCC-CGGcuGCGCGc---- -3'
miRNA:   3'- gcUCUGCGCCGGcGCU--UGUGCuuuug -5'
10917 3' -53.3 NC_002794.1 + 13119 0.66 0.989214
Target:  5'- gCGGGgucgccGCGCGGCuCGCucGCGCGGGu-- -3'
miRNA:   3'- -GCUC------UGCGCCG-GCGcuUGUGCUUuug -5'
10917 3' -53.3 NC_002794.1 + 145989 0.66 0.989078
Target:  5'- aGAG-CGCccagaacGGCCGCcgGGGC-CGGAGACg -3'
miRNA:   3'- gCUCuGCG-------CCGGCG--CUUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 183190 0.66 0.987796
Target:  5'- cCGAGACGC-GCCGC---CACGccGGCg -3'
miRNA:   3'- -GCUCUGCGcCGGCGcuuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 91140 0.66 0.987796
Target:  5'- gGAGGCGCGgacgguGCUGCuGGGCGCcguGGAGGCc -3'
miRNA:   3'- gCUCUGCGC------CGGCG-CUUGUG---CUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 89386 0.66 0.987796
Target:  5'- uCGGGA-GCGGUCGCGGugAgGuccguGGAGCg -3'
miRNA:   3'- -GCUCUgCGCCGGCGCUugUgC-----UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 86900 0.66 0.987796
Target:  5'- --cGGCGgGGCCGCcGACcCGguGACg -3'
miRNA:   3'- gcuCUGCgCCGGCGcUUGuGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 155871 0.66 0.987796
Target:  5'- uCGGGuuuACGaCGGUCGUaGACACGAGAu- -3'
miRNA:   3'- -GCUC---UGC-GCCGGCGcUUGUGCUUUug -5'
10917 3' -53.3 NC_002794.1 + 149335 0.66 0.987796
Target:  5'- -cGGACcgaacCGGCCGgGGuCGCGggGGCg -3'
miRNA:   3'- gcUCUGc----GCCGGCgCUuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 138425 0.66 0.987796
Target:  5'- cCGAcuCGuCGaGCCGCGGugGCGGcgGCg -3'
miRNA:   3'- -GCUcuGC-GC-CGGCGCUugUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 185175 0.66 0.987796
Target:  5'- --cGGCGCGG-CGCGGucgGCGCGGucGGCg -3'
miRNA:   3'- gcuCUGCGCCgGCGCU---UGUGCUu-UUG- -5'
10917 3' -53.3 NC_002794.1 + 70742 0.66 0.987796
Target:  5'- gGAGcaGCGCGaGcCCGgGAaacaGCugGGAGACg -3'
miRNA:   3'- gCUC--UGCGC-C-GGCgCU----UGugCUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.