Results 21 - 40 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 70742 | 0.66 | 0.987796 |
Target: 5'- gGAGcaGCGCGaGcCCGgGAaacaGCugGGAGACg -3' miRNA: 3'- gCUC--UGCGC-C-GGCgCU----UGugCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 142203 | 0.66 | 0.987647 |
Target: 5'- gCGGGAaGCGGCgGCGGcagcgGCggugcggggagcgGCGGAGGCg -3' miRNA: 3'- -GCUCUgCGCCGgCGCU-----UG-------------UGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 51176 | 0.66 | 0.989214 |
Target: 5'- --cGACGCGGCCGUucGC-CGAu--- -3' miRNA: 3'- gcuCUGCGCCGGCGcuUGuGCUuuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 18498 | 0.66 | 0.989214 |
Target: 5'- aGcAGuagaGGCCGCGAACGCGAc--- -3' miRNA: 3'- gC-UCugcgCCGGCGCUUGUGCUuuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 118268 | 0.66 | 0.989214 |
Target: 5'- cCGGGGCgGCGG-CGCcGGCGuCGggGACc -3' miRNA: 3'- -GCUCUG-CGCCgGCGcUUGU-GCuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 111167 | 0.66 | 0.989214 |
Target: 5'- -cAGACGCGGUgcaggGCGcGCACGAAcuCg -3' miRNA: 3'- gcUCUGCGCCGg----CGCuUGUGCUUuuG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 84003 | 0.66 | 0.989214 |
Target: 5'- aCGGGcACGacgGGCaCGaCGGGCACGAGcGACg -3' miRNA: 3'- -GCUC-UGCg--CCG-GC-GCUUGUGCUU-UUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 121391 | 0.66 | 0.989214 |
Target: 5'- cCGGGAcCGCGGCCgGCGccggGAcCGCGAc--- -3' miRNA: 3'- -GCUCU-GCGCCGG-CGC----UU-GUGCUuuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 146594 | 0.66 | 0.989214 |
Target: 5'- --cGACGaaGCUGuCGAGCgACGAAGGCg -3' miRNA: 3'- gcuCUGCgcCGGC-GCUUG-UGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 153358 | 0.66 | 0.989214 |
Target: 5'- -aGGACGCGGCC-CGGcuGCGCGc---- -3' miRNA: 3'- gcUCUGCGCCGGcGCU--UGUGCuuuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 13119 | 0.66 | 0.989214 |
Target: 5'- gCGGGgucgccGCGCGGCuCGCucGCGCGGGu-- -3' miRNA: 3'- -GCUC------UGCGCCG-GCGcuUGUGCUUuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 145989 | 0.66 | 0.989078 |
Target: 5'- aGAG-CGCccagaacGGCCGCcgGGGC-CGGAGACg -3' miRNA: 3'- gCUCuGCG-------CCGGCG--CUUGuGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 91140 | 0.66 | 0.987796 |
Target: 5'- gGAGGCGCGgacgguGCUGCuGGGCGCcguGGAGGCc -3' miRNA: 3'- gCUCUGCGC------CGGCG-CUUGUG---CUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 89386 | 0.66 | 0.987796 |
Target: 5'- uCGGGA-GCGGUCGCGGugAgGuccguGGAGCg -3' miRNA: 3'- -GCUCUgCGCCGGCGCUugUgC-----UUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 86900 | 0.66 | 0.987796 |
Target: 5'- --cGGCGgGGCCGCcGACcCGguGACg -3' miRNA: 3'- gcuCUGCgCCGGCGcUUGuGCuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 155871 | 0.66 | 0.987796 |
Target: 5'- uCGGGuuuACGaCGGUCGUaGACACGAGAu- -3' miRNA: 3'- -GCUC---UGC-GCCGGCGcUUGUGCUUUug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 149335 | 0.66 | 0.987796 |
Target: 5'- -cGGACcgaacCGGCCGgGGuCGCGggGGCg -3' miRNA: 3'- gcUCUGc----GCCGGCgCUuGUGCuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 138425 | 0.66 | 0.987796 |
Target: 5'- cCGAcuCGuCGaGCCGCGGugGCGGcgGCg -3' miRNA: 3'- -GCUcuGC-GC-CGGCGCUugUGCUuuUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 185175 | 0.66 | 0.987796 |
Target: 5'- --cGGCGCGG-CGCGGucgGCGCGGucGGCg -3' miRNA: 3'- gcuCUGCGCCgGCGCU---UGUGCUu-UUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 183190 | 0.66 | 0.987796 |
Target: 5'- cCGAGACGC-GCCGC---CACGccGGCg -3' miRNA: 3'- -GCUCUGCGcCGGCGcuuGUGCuuUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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