miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 70742 0.66 0.987796
Target:  5'- gGAGcaGCGCGaGcCCGgGAaacaGCugGGAGACg -3'
miRNA:   3'- gCUC--UGCGC-C-GGCgCU----UGugCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 117367 0.66 0.987796
Target:  5'- gGAGcgGCG-GGCCGCcuGCACGGucGCg -3'
miRNA:   3'- gCUC--UGCgCCGGCGcuUGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 105716 0.66 0.987647
Target:  5'- uCGAGGCgaucgcgGCGGCCGU---CGgGAAAGCg -3'
miRNA:   3'- -GCUCUG-------CGCCGGCGcuuGUgCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 192000 0.67 0.976068
Target:  5'- cCGGGACgguaGCGGCgGUGGcCGCGGcuGCu -3'
miRNA:   3'- -GCUCUG----CGCCGgCGCUuGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 149621 0.67 0.976068
Target:  5'- gGGGACGUGGgacgCGCGAuACGCGugGAUg -3'
miRNA:   3'- gCUCUGCGCCg---GCGCU-UGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 187489 0.67 0.976068
Target:  5'- cCGAgGACGaGGCCGCGcAgGCGGccaGGGCg -3'
miRNA:   3'- -GCU-CUGCgCCGGCGCuUgUGCU---UUUG- -5'
10917 3' -53.3 NC_002794.1 + 135271 0.67 0.976068
Target:  5'- gCGAGACGa-GCgCGCGAGCcggACGGguAAACa -3'
miRNA:   3'- -GCUCUGCgcCG-GCGCUUG---UGCU--UUUG- -5'
10917 3' -53.3 NC_002794.1 + 14300 0.67 0.976068
Target:  5'- uCGAGGCGCGGgguaGCuuuuGGgGCGAAGACg -3'
miRNA:   3'- -GCUCUGCGCCgg--CGc---UUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 179988 0.67 0.976068
Target:  5'- -aAGGCgGUGGCCGCGAcggcgggcccgGcCACGAcGACg -3'
miRNA:   3'- gcUCUG-CGCCGGCGCU-----------U-GUGCUuUUG- -5'
10917 3' -53.3 NC_002794.1 + 147065 0.67 0.97582
Target:  5'- -aGGACG-GaGCCGCGGGCgcccgguccaaggACGAAGGCg -3'
miRNA:   3'- gcUCUGCgC-CGGCGCUUG-------------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 135477 0.67 0.976068
Target:  5'- aCGAcGACGCcGCCGuCGAcGCGCGcgGGCc -3'
miRNA:   3'- -GCU-CUGCGcCGGC-GCU-UGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 9122 0.67 0.978446
Target:  5'- uGAGGC-CGGgcgacgaaCCGCGcGCGCGAGAGa -3'
miRNA:   3'- gCUCUGcGCC--------GGCGCuUGUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 55217 0.67 0.978446
Target:  5'- gGAGGC-CGGCgGuCGAGC-CGAcGACg -3'
miRNA:   3'- gCUCUGcGCCGgC-GCUUGuGCUuUUG- -5'
10917 3' -53.3 NC_002794.1 + 33449 0.67 0.978446
Target:  5'- -aGGACcucggGCGGCCGCcGGACGCGcccACg -3'
miRNA:   3'- gcUCUG-----CGCCGGCG-CUUGUGCuuuUG- -5'
10917 3' -53.3 NC_002794.1 + 117660 0.67 0.978446
Target:  5'- aGAGcgccacGCGCGGCgGCGcguacuGCACGuAGGCc -3'
miRNA:   3'- gCUC------UGCGCCGgCGCu-----UGUGCuUUUG- -5'
10917 3' -53.3 NC_002794.1 + 118047 0.67 0.978446
Target:  5'- gCGAG-CGUGGCC-CGucuCGCgGAAGACg -3'
miRNA:   3'- -GCUCuGCGCCGGcGCuu-GUG-CUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 61559 0.67 0.978446
Target:  5'- cCGcGGCgGCGGCCGCcgucGAACACcuAGACc -3'
miRNA:   3'- -GCuCUG-CGCCGGCG----CUUGUGcuUUUG- -5'
10917 3' -53.3 NC_002794.1 + 18249 0.67 0.978446
Target:  5'- ---cGCGCGGCCgaccgGCGAcCGCGAGAuGCg -3'
miRNA:   3'- gcucUGCGCCGG-----CGCUuGUGCUUU-UG- -5'
10917 3' -53.3 NC_002794.1 + 184504 0.67 0.978446
Target:  5'- cCGGGcgGCGCGGgccCCGCGcgcGGCGCGGGcGACg -3'
miRNA:   3'- -GCUC--UGCGCC---GGCGC---UUGUGCUU-UUG- -5'
10917 3' -53.3 NC_002794.1 + 124504 0.67 0.976068
Target:  5'- gGAGucGCGuCGGCCGCGAgACAa-GGAGCc -3'
miRNA:   3'- gCUC--UGC-GCCGGCGCU-UGUgcUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.