miRNA display CGI


Results 1 - 20 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 7 1.11 0.005614
Target:  5'- cCGAGACGCGGCCGCGAACACGAAAACg -3'
miRNA:   3'- -GCUCUGCGCCGGCGCUUGUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 18523 0.89 0.133218
Target:  5'- gCGA-ACGCGGCCGCGAACGCGAGcACg -3'
miRNA:   3'- -GCUcUGCGCCGGCGCUUGUGCUUuUG- -5'
10917 3' -53.3 NC_002794.1 + 94487 0.85 0.214745
Target:  5'- -cGGACGCGGCCGCGGGCcgugGCGggGAUg -3'
miRNA:   3'- gcUCUGCGCCGGCGCUUG----UGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 116010 0.81 0.391072
Target:  5'- gGAGAcCGCGGUgGCGAuugGCGCGggGACc -3'
miRNA:   3'- gCUCU-GCGCCGgCGCU---UGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 89334 0.81 0.391072
Target:  5'- gGGGACGCGGCgGCGAGaccucCGAGGACu -3'
miRNA:   3'- gCUCUGCGCCGgCGCUUgu---GCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 14629 0.81 0.391072
Target:  5'- gGAGACGgGGCCG--GGCACGGAGACg -3'
miRNA:   3'- gCUCUGCgCCGGCgcUUGUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 82832 0.8 0.408004
Target:  5'- aGAGACGCacGGCgagCGCGAGCGCGAGcGCg -3'
miRNA:   3'- gCUCUGCG--CCG---GCGCUUGUGCUUuUG- -5'
10917 3' -53.3 NC_002794.1 + 63675 0.8 0.399481
Target:  5'- aCGAG-CGCGGCCGCGGcgACgACGAuGACg -3'
miRNA:   3'- -GCUCuGCGCCGGCGCU--UG-UGCUuUUG- -5'
10917 3' -53.3 NC_002794.1 + 44307 0.8 0.41664
Target:  5'- gCGAGGCGgGGagcgaCCGCGAGCGCGGcgGCg -3'
miRNA:   3'- -GCUCUGCgCC-----GGCGCUUGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 143542 0.8 0.425387
Target:  5'- gGAGGCGCGGCa-CGAGCACGguGGCc -3'
miRNA:   3'- gCUCUGCGCCGgcGCUUGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 91876 0.79 0.480052
Target:  5'- gGGGugGCGGCgGCGGcCGCGAcGAGCa -3'
miRNA:   3'- gCUCugCGCCGgCGCUuGUGCU-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 79434 0.78 0.528096
Target:  5'- cCGGcGGCgGCGGCgGCGAccgGCGCGGAGACg -3'
miRNA:   3'- -GCU-CUG-CGCCGgCGCU---UGUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 34726 0.78 0.499029
Target:  5'- aCGAGGCgcggGCGGCCGCaGAgcGCGCGAcgGCg -3'
miRNA:   3'- -GCUCUG----CGCCGGCG-CU--UGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 95762 0.78 0.537926
Target:  5'- gCGGGGCgGCGGCCGCGAcggcggccgGgGCGAGAGg -3'
miRNA:   3'- -GCUCUG-CGCCGGCGCU---------UgUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 112107 0.78 0.518333
Target:  5'- -cAGGCGCGGCCGgGAcgacgGCGCGggGAg -3'
miRNA:   3'- gcUCUGCGCCGGCgCU-----UGUGCuuUUg -5'
10917 3' -53.3 NC_002794.1 + 92302 0.77 0.587895
Target:  5'- aCGAGGCGgGGCugggCGCGGGCgGCGggGGCc -3'
miRNA:   3'- -GCUCUGCgCCG----GCGCUUG-UGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 93842 0.76 0.598009
Target:  5'- cCGAGAucauggacggcCGCGGCgGCGAGCcgcccgaguACGAGGACg -3'
miRNA:   3'- -GCUCU-----------GCGCCGgCGCUUG---------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 125450 0.76 0.618305
Target:  5'- -aGGGCGaCGGCgGCGAGCACGGccGCg -3'
miRNA:   3'- gcUCUGC-GCCGgCGCUUGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 114072 0.76 0.608148
Target:  5'- uGAGcuCGCGGUCGUGAGcCACGAAGAa -3'
miRNA:   3'- gCUCu-GCGCCGGCGCUU-GUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 34869 0.75 0.69927
Target:  5'- gCGGGcgcCGCGgacGCCGCGAACGCGGAAc- -3'
miRNA:   3'- -GCUCu--GCGC---CGGCGCUUGUGCUUUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.