miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 105136 0.75 0.679191
Target:  5'- -aGGAUGCGGUCGCGgAGCACGu-AGCg -3'
miRNA:   3'- gcUCUGCGCCGGCGC-UUGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 34869 0.75 0.69927
Target:  5'- gCGGGcgcCGCGgacGCCGCGAACGCGGAAc- -3'
miRNA:   3'- -GCUCu--GCGC---CGGCGCUUGUGCUUUug -5'
10917 3' -53.3 NC_002794.1 + 43621 0.75 0.679191
Target:  5'- -aGGACGUGGCCGCcagGAGCugGuGGAACa -3'
miRNA:   3'- gcUCUGCGCCGGCG---CUUGugC-UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 141648 0.75 0.679191
Target:  5'- --cGGCGUGGCCGCGGccGCcggcgggucgaGCGAAGACg -3'
miRNA:   3'- gcuCUGCGCCGGCGCU--UG-----------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 100137 0.75 0.689254
Target:  5'- aCGGGACGCGGCCGUucGC-CGAc--- -3'
miRNA:   3'- -GCUCUGCGCCGGCGcuUGuGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 82487 0.75 0.66909
Target:  5'- cCGcGACGCGGCCcgccGCGAcGCGCGAGAc- -3'
miRNA:   3'- -GCuCUGCGCCGG----CGCU-UGUGCUUUug -5'
10917 3' -53.3 NC_002794.1 + 130142 0.75 0.689254
Target:  5'- aCGcuGCGCGG-CGCGAGCGCGGGAucACg -3'
miRNA:   3'- -GCucUGCGCCgGCGCUUGUGCUUU--UG- -5'
10917 3' -53.3 NC_002794.1 + 133806 0.74 0.748335
Target:  5'- uGGGGCGauCGGCCGCGAucuACGCGu--ACg -3'
miRNA:   3'- gCUCUGC--GCCGGCGCU---UGUGCuuuUG- -5'
10917 3' -53.3 NC_002794.1 + 89928 0.74 0.738688
Target:  5'- aGAGGCGCGGgCGCcGGCuucuCGGGAGCc -3'
miRNA:   3'- gCUCUGCGCCgGCGcUUGu---GCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 120057 0.74 0.719126
Target:  5'- -cGGugGCGGCCGCGGaggccgACGCGGcgguGGCg -3'
miRNA:   3'- gcUCugCGCCGGCGCU------UGUGCUu---UUG- -5'
10917 3' -53.3 NC_002794.1 + 38162 0.74 0.719126
Target:  5'- gCGAGcAgGCGGCUGCGcucGGCgACGAAGGCg -3'
miRNA:   3'- -GCUC-UgCGCCGGCGC---UUG-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 38455 0.74 0.72601
Target:  5'- gGAGccgGCGCGGCCGCGGcGCGCccuuuaugggcggaGGAAGCg -3'
miRNA:   3'- gCUC---UGCGCCGGCGCU-UGUG--------------CUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 62472 0.74 0.719126
Target:  5'- uCGAGGCGCGcCuCGaCGAGCGCGAGugGACg -3'
miRNA:   3'- -GCUCUGCGCcG-GC-GCUUGUGCUU--UUG- -5'
10917 3' -53.3 NC_002794.1 + 99798 0.74 0.728948
Target:  5'- aCGAG-CGCGcGCCGCGGGCGCc--GGCg -3'
miRNA:   3'- -GCUCuGCGC-CGGCGCUUGUGcuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 148131 0.74 0.748335
Target:  5'- uCGGGcGCGgGGCCGCcGGgGCGAGGGCg -3'
miRNA:   3'- -GCUC-UGCgCCGGCGcUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 140022 0.73 0.785829
Target:  5'- gGAGGcCGCGGCCcccGCGGGCgGCGGGAGa -3'
miRNA:   3'- gCUCU-GCGCCGG---CGCUUG-UGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 40620 0.73 0.776638
Target:  5'- cCGAcucCGCGGaguCCGCGAGCGCGAgcuGAGCg -3'
miRNA:   3'- -GCUcu-GCGCC---GGCGCUUGUGCU---UUUG- -5'
10917 3' -53.3 NC_002794.1 + 55272 0.73 0.776638
Target:  5'- cCGGGGgGCGGCgGUGGcgGCgACGAGGGCg -3'
miRNA:   3'- -GCUCUgCGCCGgCGCU--UG-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 175727 0.73 0.757882
Target:  5'- gCGAGgaGCGUGGCCGUGAGaGCGAGu-- -3'
miRNA:   3'- -GCUC--UGCGCCGGCGCUUgUGCUUuug -5'
10917 3' -53.3 NC_002794.1 + 94278 0.73 0.76732
Target:  5'- gCGcGGCGCGGCC-CGAGCG-GggGGCg -3'
miRNA:   3'- -GCuCUGCGCCGGcGCUUGUgCuuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.