miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 101026 0.72 0.812549
Target:  5'- gGGGACGCGGgC-CGGGCGCGGGucGGCc -3'
miRNA:   3'- gCUCUGCGCCgGcGCUUGUGCUU--UUG- -5'
10917 3' -53.3 NC_002794.1 + 38268 0.72 0.829568
Target:  5'- uGAGGCGCGGCC-CccGCGCGAcguAGCu -3'
miRNA:   3'- gCUCUGCGCCGGcGcuUGUGCUu--UUG- -5'
10917 3' -53.3 NC_002794.1 + 156405 0.72 0.837815
Target:  5'- cCGGcGcCGCGGCCGCGGcCACGGccGGCg -3'
miRNA:   3'- -GCU-CuGCGCCGGCGCUuGUGCUu-UUG- -5'
10917 3' -53.3 NC_002794.1 + 149959 0.72 0.812549
Target:  5'- uCGGGACGUGGCCgaccugccGCGGAC-CGGcgGCc -3'
miRNA:   3'- -GCUCUGCGCCGG--------CGCUUGuGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 74379 0.72 0.837815
Target:  5'- uCGGGG-GCGGCCggcGCGAcuACACGAccGAGCg -3'
miRNA:   3'- -GCUCUgCGCCGG---CGCU--UGUGCU--UUUG- -5'
10917 3' -53.3 NC_002794.1 + 71232 0.72 0.837815
Target:  5'- gCGuAGugGCGGCCGgCGuggaccGGCACGuAGAACu -3'
miRNA:   3'- -GC-UCugCGCCGGC-GC------UUGUGC-UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 55011 0.72 0.845877
Target:  5'- cCGGGcguccgccgccGCGCcGCCGCGAGCACGGc--- -3'
miRNA:   3'- -GCUC-----------UGCGcCGGCGCUUGUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 127348 0.71 0.883191
Target:  5'- cCGAGAcgcuCGCGGCgGCG-GCGCGGccGCu -3'
miRNA:   3'- -GCUCU----GCGCCGgCGCuUGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 183513 0.71 0.868152
Target:  5'- cCGAGAcccauguCGCGGCCGUGcGCGCcccguccgcccGggGACa -3'
miRNA:   3'- -GCUCU-------GCGCCGGCGCuUGUG-----------CuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 145236 0.71 0.86889
Target:  5'- gGAGGCGCGcgcGCUGCGGAaGCGGAucGCg -3'
miRNA:   3'- gCUCUGCGC---CGGCGCUUgUGCUUu-UG- -5'
10917 3' -53.3 NC_002794.1 + 21651 0.71 0.86889
Target:  5'- aCGaAGAaGCGGCgGCGGugGCGGcgGCg -3'
miRNA:   3'- -GC-UCUgCGCCGgCGCUugUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 145860 0.71 0.853748
Target:  5'- aCGAGcCGCcgagGGCCGCGAccggacCGCGAGAAg -3'
miRNA:   3'- -GCUCuGCG----CCGGCGCUu-----GUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 133920 0.71 0.876148
Target:  5'- aCGAGACgGCGGCCGCGcccguccaguUGCGggGu- -3'
miRNA:   3'- -GCUCUG-CGCCGGCGCuu--------GUGCuuUug -5'
10917 3' -53.3 NC_002794.1 + 125741 0.71 0.861421
Target:  5'- gGAGGCG-GGCCGCGGG-ACGGcgGCc -3'
miRNA:   3'- gCUCUGCgCCGGCGCUUgUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 102410 0.71 0.856842
Target:  5'- cCGcGACGCGGCCGUGGccgaggccgccacgcGCAUGuccGAGCu -3'
miRNA:   3'- -GCuCUGCGCCGGCGCU---------------UGUGCu--UUUG- -5'
10917 3' -53.3 NC_002794.1 + 70301 0.71 0.875432
Target:  5'- gGGGGCcCGGgCGCGAAgagccgcuucgccCGCGAAGACg -3'
miRNA:   3'- gCUCUGcGCCgGCGCUU-------------GUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 113494 0.7 0.890015
Target:  5'- gGAGcucgcGCGCGGCCGaGAGcCGCGGAGGg -3'
miRNA:   3'- gCUC-----UGCGCCGGCgCUU-GUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 192151 0.7 0.887991
Target:  5'- --cGGCGCGGUCGCGGcggaGCcugcgguagguccgGCGAAGGCg -3'
miRNA:   3'- gcuCUGCGCCGGCGCU----UG--------------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 33113 0.7 0.890015
Target:  5'- aCGuGA-GCGGCCGCGGGCagACGAu--- -3'
miRNA:   3'- -GCuCUgCGCCGGCGCUUG--UGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 47753 0.7 0.890015
Target:  5'- --cGugGCGGCCGUGGuCGCGGcacAACg -3'
miRNA:   3'- gcuCugCGCCGGCGCUuGUGCUu--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.