Results 21 - 40 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 141648 | 0.75 | 0.679191 |
Target: 5'- --cGGCGUGGCCGCGGccGCcggcgggucgaGCGAAGACg -3' miRNA: 3'- gcuCUGCGCCGGCGCU--UG-----------UGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 43621 | 0.75 | 0.679191 |
Target: 5'- -aGGACGUGGCCGCcagGAGCugGuGGAACa -3' miRNA: 3'- gcUCUGCGCCGGCG---CUUGugC-UUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 105136 | 0.75 | 0.679191 |
Target: 5'- -aGGAUGCGGUCGCGgAGCACGu-AGCg -3' miRNA: 3'- gcUCUGCGCCGGCGC-UUGUGCuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 102190 | 0.75 | 0.679191 |
Target: 5'- gCGAGGaccugGCGGCCGCcGugACGGAGGCc -3' miRNA: 3'- -GCUCUg----CGCCGGCGcUugUGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 130142 | 0.75 | 0.689254 |
Target: 5'- aCGcuGCGCGG-CGCGAGCGCGGGAucACg -3' miRNA: 3'- -GCucUGCGCCgGCGCUUGUGCUUU--UG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 100137 | 0.75 | 0.689254 |
Target: 5'- aCGGGACGCGGCCGUucGC-CGAc--- -3' miRNA: 3'- -GCUCUGCGCCGGCGcuUGuGCUuuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 34869 | 0.75 | 0.69927 |
Target: 5'- gCGGGcgcCGCGgacGCCGCGAACGCGGAAc- -3' miRNA: 3'- -GCUCu--GCGC---CGGCGCUUGUGCUUUug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 120057 | 0.74 | 0.719126 |
Target: 5'- -cGGugGCGGCCGCGGaggccgACGCGGcgguGGCg -3' miRNA: 3'- gcUCugCGCCGGCGCU------UGUGCUu---UUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 62472 | 0.74 | 0.719126 |
Target: 5'- uCGAGGCGCGcCuCGaCGAGCGCGAGugGACg -3' miRNA: 3'- -GCUCUGCGCcG-GC-GCUUGUGCUU--UUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 38162 | 0.74 | 0.719126 |
Target: 5'- gCGAGcAgGCGGCUGCGcucGGCgACGAAGGCg -3' miRNA: 3'- -GCUC-UgCGCCGGCGC---UUG-UGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 38455 | 0.74 | 0.72601 |
Target: 5'- gGAGccgGCGCGGCCGCGGcGCGCccuuuaugggcggaGGAAGCg -3' miRNA: 3'- gCUC---UGCGCCGGCGCU-UGUG--------------CUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 99798 | 0.74 | 0.728948 |
Target: 5'- aCGAG-CGCGcGCCGCGGGCGCc--GGCg -3' miRNA: 3'- -GCUCuGCGC-CGGCGCUUGUGcuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 89928 | 0.74 | 0.738688 |
Target: 5'- aGAGGCGCGGgCGCcGGCuucuCGGGAGCc -3' miRNA: 3'- gCUCUGCGCCgGCGcUUGu---GCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 133806 | 0.74 | 0.748335 |
Target: 5'- uGGGGCGauCGGCCGCGAucuACGCGu--ACg -3' miRNA: 3'- gCUCUGC--GCCGGCGCU---UGUGCuuuUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 148131 | 0.74 | 0.748335 |
Target: 5'- uCGGGcGCGgGGCCGCcGGgGCGAGGGCg -3' miRNA: 3'- -GCUC-UGCgCCGGCGcUUgUGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 175727 | 0.73 | 0.757882 |
Target: 5'- gCGAGgaGCGUGGCCGUGAGaGCGAGu-- -3' miRNA: 3'- -GCUC--UGCGCCGGCGCUUgUGCUUuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 94278 | 0.73 | 0.76732 |
Target: 5'- gCGcGGCGCGGCC-CGAGCG-GggGGCg -3' miRNA: 3'- -GCuCUGCGCCGGcGCUUGUgCuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 82003 | 0.73 | 0.76732 |
Target: 5'- uCGAcGACGcCGGCCGCuGACGCcGAAACc -3' miRNA: 3'- -GCU-CUGC-GCCGGCGcUUGUGcUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 40620 | 0.73 | 0.776638 |
Target: 5'- cCGAcucCGCGGaguCCGCGAGCGCGAgcuGAGCg -3' miRNA: 3'- -GCUcu-GCGCC---GGCGCUUGUGCU---UUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 55272 | 0.73 | 0.776638 |
Target: 5'- cCGGGGgGCGGCgGUGGcgGCgACGAGGGCg -3' miRNA: 3'- -GCUCUgCGCCGgCGCU--UG-UGCUUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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