miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 40620 0.73 0.776638
Target:  5'- cCGAcucCGCGGaguCCGCGAGCGCGAgcuGAGCg -3'
miRNA:   3'- -GCUcu-GCGCC---GGCGCUUGUGCU---UUUG- -5'
10917 3' -53.3 NC_002794.1 + 55272 0.73 0.776638
Target:  5'- cCGGGGgGCGGCgGUGGcgGCgACGAGGGCg -3'
miRNA:   3'- -GCUCUgCGCCGgCGCU--UG-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 37750 0.73 0.785829
Target:  5'- gCGGcGGCGCGGCgGCGccgGCGGGAGCg -3'
miRNA:   3'- -GCU-CUGCGCCGgCGCuugUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 78149 0.73 0.785829
Target:  5'- uCGAGACGCcgcucgaGCCGCGAGCGCu----- -3'
miRNA:   3'- -GCUCUGCGc------CGGCGCUUGUGcuuuug -5'
10917 3' -53.3 NC_002794.1 + 135561 0.73 0.785829
Target:  5'- aGGGGCGCaGGCCGgCGAcCGauCGGAAACg -3'
miRNA:   3'- gCUCUGCG-CCGGC-GCUuGU--GCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 140022 0.73 0.785829
Target:  5'- gGAGGcCGCGGCCcccGCGGGCgGCGGGAGa -3'
miRNA:   3'- gCUCU-GCGCCGG---CGCUUG-UGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 134127 0.72 0.803793
Target:  5'- cCGAcGGCGCGGC---GAGCGCGGAAGCu -3'
miRNA:   3'- -GCU-CUGCGCCGgcgCUUGUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 19893 0.72 0.803793
Target:  5'- --cGAcCGCuGCCGCGAGCACGAccuGACc -3'
miRNA:   3'- gcuCU-GCGcCGGCGCUUGUGCUu--UUG- -5'
10917 3' -53.3 NC_002794.1 + 185766 0.72 0.803793
Target:  5'- --cGGCGCGGCCGCccgucacacgucGGccgGCGCGggGACc -3'
miRNA:   3'- gcuCUGCGCCGGCG------------CU---UGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 21910 0.72 0.803793
Target:  5'- -cGGugGUGGCgGCGGAgACGAcgGCg -3'
miRNA:   3'- gcUCugCGCCGgCGCUUgUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 21368 0.72 0.812549
Target:  5'- aGAGACGCGGCgGCGGcCGCc----- -3'
miRNA:   3'- gCUCUGCGCCGgCGCUuGUGcuuuug -5'
10917 3' -53.3 NC_002794.1 + 101026 0.72 0.812549
Target:  5'- gGGGACGCGGgC-CGGGCGCGGGucGGCc -3'
miRNA:   3'- gCUCUGCGCCgGcGCUUGUGCUU--UUG- -5'
10917 3' -53.3 NC_002794.1 + 149959 0.72 0.812549
Target:  5'- uCGGGACGUGGCCgaccugccGCGGAC-CGGcgGCc -3'
miRNA:   3'- -GCUCUGCGCCGG--------CGCUUGuGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 120140 0.72 0.821143
Target:  5'- gGGGACG-GGCCGgugcCGGACgACGAGGACc -3'
miRNA:   3'- gCUCUGCgCCGGC----GCUUG-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 70254 0.72 0.821143
Target:  5'- aGcAGACGCgcagcgacggaGGCCGCGAAgGCcgGAGAGCa -3'
miRNA:   3'- gC-UCUGCG-----------CCGGCGCUUgUG--CUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 61519 0.72 0.828733
Target:  5'- -cGGACgGCGGCCGCcGGCggccgccGCGAAGACg -3'
miRNA:   3'- gcUCUG-CGCCGGCGcUUG-------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 184042 0.72 0.829568
Target:  5'- gCGcAGcGCGCGGUCGCGGGcCGCGGcgAAGCg -3'
miRNA:   3'- -GC-UC-UGCGCCGGCGCUU-GUGCU--UUUG- -5'
10917 3' -53.3 NC_002794.1 + 157307 0.72 0.829568
Target:  5'- aGAcACGCGGCgCuCGAAgACGAAGACg -3'
miRNA:   3'- gCUcUGCGCCG-GcGCUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 38268 0.72 0.829568
Target:  5'- uGAGGCGCGGCC-CccGCGCGAcguAGCu -3'
miRNA:   3'- gCUCUGCGCCGGcGcuUGUGCUu--UUG- -5'
10917 3' -53.3 NC_002794.1 + 55859 0.72 0.83536
Target:  5'- gGuGAUGCgGGCCGCGAucugcgcgcccaguGCACGAucauGGCg -3'
miRNA:   3'- gCuCUGCG-CCGGCGCU--------------UGUGCUu---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.