Results 61 - 80 of 274 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 76712 | 0.72 | 0.837815 |
Target: 5'- aGAGGauccacaCGGCCGCGAACgACGAGAu- -3' miRNA: 3'- gCUCUgc-----GCCGGCGCUUG-UGCUUUug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 156405 | 0.72 | 0.837815 |
Target: 5'- cCGGcGcCGCGGCCGCGGcCACGGccGGCg -3' miRNA: 3'- -GCU-CuGCGCCGGCGCUuGUGCUu-UUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 74379 | 0.72 | 0.837815 |
Target: 5'- uCGGGG-GCGGCCggcGCGAcuACACGAccGAGCg -3' miRNA: 3'- -GCUCUgCGCCGG---CGCU--UGUGCU--UUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 101423 | 0.72 | 0.837815 |
Target: 5'- --cGACGUGGCUGCGcGACGaucCGggGACg -3' miRNA: 3'- gcuCUGCGCCGGCGC-UUGU---GCuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 71232 | 0.72 | 0.837815 |
Target: 5'- gCGuAGugGCGGCCGgCGuggaccGGCACGuAGAACu -3' miRNA: 3'- -GC-UCugCGCCGGC-GC------UUGUGC-UUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 55011 | 0.72 | 0.845877 |
Target: 5'- cCGGGcguccgccgccGCGCcGCCGCGAGCACGGc--- -3' miRNA: 3'- -GCUC-----------UGCGcCGGCGCUUGUGCUuuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 21876 | 0.72 | 0.845877 |
Target: 5'- gCGAGGC-CGGCCGCGGGgugucCGCGGccuGCg -3' miRNA: 3'- -GCUCUGcGCCGGCGCUU-----GUGCUuu-UG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 145860 | 0.71 | 0.853748 |
Target: 5'- aCGAGcCGCcgagGGCCGCGAccggacCGCGAGAAg -3' miRNA: 3'- -GCUCuGCG----CCGGCGCUu-----GUGCUUUUg -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 102410 | 0.71 | 0.856842 |
Target: 5'- cCGcGACGCGGCCGUGGccgaggccgccacgcGCAUGuccGAGCu -3' miRNA: 3'- -GCuCUGCGCCGGCGCU---------------UGUGCu--UUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 125741 | 0.71 | 0.861421 |
Target: 5'- gGAGGCG-GGCCGCGGG-ACGGcgGCc -3' miRNA: 3'- gCUCUGCgCCGGCGCUUgUGCUuuUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 183513 | 0.71 | 0.868152 |
Target: 5'- cCGAGAcccauguCGCGGCCGUGcGCGCcccguccgcccGggGACa -3' miRNA: 3'- -GCUCU-------GCGCCGGCGCuUGUG-----------CuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 145236 | 0.71 | 0.86889 |
Target: 5'- gGAGGCGCGcgcGCUGCGGAaGCGGAucGCg -3' miRNA: 3'- gCUCUGCGC---CGGCGCUUgUGCUUu-UG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 21651 | 0.71 | 0.86889 |
Target: 5'- aCGaAGAaGCGGCgGCGGugGCGGcgGCg -3' miRNA: 3'- -GC-UCUgCGCCGgCGCUugUGCUuuUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 70301 | 0.71 | 0.875432 |
Target: 5'- gGGGGCcCGGgCGCGAAgagccgcuucgccCGCGAAGACg -3' miRNA: 3'- gCUCUGcGCCgGCGCUU-------------GUGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 133920 | 0.71 | 0.876148 |
Target: 5'- aCGAGACgGCGGCCGCGcccguccaguUGCGggGu- -3' miRNA: 3'- -GCUCUG-CGCCGGCGCuu--------GUGCuuUug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 127348 | 0.71 | 0.883191 |
Target: 5'- cCGAGAcgcuCGCGGCgGCG-GCGCGGccGCu -3' miRNA: 3'- -GCUCU----GCGCCGgCGCuUGUGCUuuUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 192151 | 0.7 | 0.887991 |
Target: 5'- --cGGCGCGGUCGCGGcggaGCcugcgguagguccgGCGAAGGCg -3' miRNA: 3'- gcuCUGCGCCGGCGCU----UG--------------UGCUUUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 111646 | 0.7 | 0.890015 |
Target: 5'- uCGGGcgcCGCGGCCGCGGcCACGc---- -3' miRNA: 3'- -GCUCu--GCGCCGGCGCUuGUGCuuuug -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 113873 | 0.7 | 0.890015 |
Target: 5'- -cAGGCGCgcucGGCCGCGGcGCGCGucGGCg -3' miRNA: 3'- gcUCUGCG----CCGGCGCU-UGUGCuuUUG- -5' |
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10917 | 3' | -53.3 | NC_002794.1 | + | 103905 | 0.7 | 0.890015 |
Target: 5'- gCGGGGCGagaacGCCGCGcAACGCGGcGAGCa -3' miRNA: 3'- -GCUCUGCgc---CGGCGC-UUGUGCU-UUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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