miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 120104 0.66 0.984532
Target:  5'- cCGAGcGCGCcGCgCGUGAcgcGCGCGAcgGCg -3'
miRNA:   3'- -GCUC-UGCGcCG-GCGCU---UGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 121735 0.66 0.984532
Target:  5'- aCGAcGACGagcaCGGCgGCGAG-ACGGAGAUg -3'
miRNA:   3'- -GCU-CUGC----GCCGgCGCUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 138966 0.66 0.982864
Target:  5'- --cGACGCGGCggacggguuggccugGCGGgccuGCGCGAAGGCu -3'
miRNA:   3'- gcuCUGCGCCGg--------------CGCU----UGUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 104485 0.66 0.98267
Target:  5'- gCGGGcggccACgGCGGCCGgGucGgGCGAGAACg -3'
miRNA:   3'- -GCUC-----UG-CGCCGGCgCu-UgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 126661 0.66 0.98267
Target:  5'- aGAGAcCGacgGGCCGCG---GCGAGGGCc -3'
miRNA:   3'- gCUCU-GCg--CCGGCGCuugUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 6022 0.66 0.98267
Target:  5'- aGAG-CGUGGUCGCcAGCuuuaccgaaGCGGAGACu -3'
miRNA:   3'- gCUCuGCGCCGGCGcUUG---------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 129888 0.66 0.98267
Target:  5'- -uGGACGCGGgagaGCGAACGgcgcUGGGAGCa -3'
miRNA:   3'- gcUCUGCGCCgg--CGCUUGU----GCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 61962 0.66 0.98267
Target:  5'- cCGAGGCcaGCGGCCGCcugcuGCAgGucAAGCu -3'
miRNA:   3'- -GCUCUG--CGCCGGCGcu---UGUgCu-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 101857 0.66 0.98267
Target:  5'- aCGAGACGC-GCCGCcuGCugcuCGAcaagGAGCa -3'
miRNA:   3'- -GCUCUGCGcCGGCGcuUGu---GCU----UUUG- -5'
10917 3' -53.3 NC_002794.1 + 102754 0.66 0.98267
Target:  5'- cCGAGgacccggacuACGUGGCCGCGcAC-CGGGuGCc -3'
miRNA:   3'- -GCUC----------UGCGCCGGCGCuUGuGCUUuUG- -5'
10917 3' -53.3 NC_002794.1 + 190759 0.66 0.98267
Target:  5'- gGGGGCgGCGGCCGCGcguCcCGGuagauGAACu -3'
miRNA:   3'- gCUCUG-CGCCGGCGCuu-GuGCU-----UUUG- -5'
10917 3' -53.3 NC_002794.1 + 149280 0.66 0.98267
Target:  5'- cCGGcGGCGCGGCgGCucgcuCACGggGGg -3'
miRNA:   3'- -GCU-CUGCGCCGgCGcuu--GUGCuuUUg -5'
10917 3' -53.3 NC_002794.1 + 62706 0.66 0.982475
Target:  5'- -----gGCGGCCGCcGACGCGAcccagcgAGACg -3'
miRNA:   3'- gcucugCGCCGGCGcUUGUGCU-------UUUG- -5'
10917 3' -53.3 NC_002794.1 + 1679 0.66 0.980644
Target:  5'- cCGAGGCGCccaccGGCC-UGA-UACGggGACc -3'
miRNA:   3'- -GCUCUGCG-----CCGGcGCUuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 1616 0.66 0.980644
Target:  5'- cCGAGGCGCccaccGGCC-UGA-UACGggGACc -3'
miRNA:   3'- -GCUCUGCG-----CCGGcGCUuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 59129 0.66 0.980644
Target:  5'- cCGAGgccgacuucGCGCagGGCCGCGucgcGCACGAc--- -3'
miRNA:   3'- -GCUC---------UGCG--CCGGCGCu---UGUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 70983 0.66 0.980644
Target:  5'- aCGAGAaaCGCcucgauGGCCGUGAGCcCGGAc-- -3'
miRNA:   3'- -GCUCU--GCG------CCGGCGCUUGuGCUUuug -5'
10917 3' -53.3 NC_002794.1 + 62070 0.66 0.980644
Target:  5'- gCGGcGACGcCGGCgGCGAcgACGgcGACg -3'
miRNA:   3'- -GCU-CUGC-GCCGgCGCUugUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 138585 0.66 0.980644
Target:  5'- uCGAGGCGCGuCgGCGcGGCG-GAGAGCg -3'
miRNA:   3'- -GCUCUGCGCcGgCGC-UUGUgCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 11519 0.66 0.980644
Target:  5'- aCGuGACGauCGaGCUGCGGGCGacCGAGGACc -3'
miRNA:   3'- -GCuCUGC--GC-CGGCGCUUGU--GCUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.