miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 21876 0.72 0.845877
Target:  5'- gCGAGGC-CGGCCGCGGGgugucCGCGGccuGCg -3'
miRNA:   3'- -GCUCUGcGCCGGCGCUU-----GUGCUuu-UG- -5'
10917 3' -53.3 NC_002794.1 + 21910 0.72 0.803793
Target:  5'- -cGGugGUGGCgGCGGAgACGAcgGCg -3'
miRNA:   3'- gcUCugCGCCGgCGCUUgUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 23868 0.66 0.980644
Target:  5'- cCGGGcuucaaAC-CGGaCCGCGAACGcCGAGGGCc -3'
miRNA:   3'- -GCUC------UGcGCC-GGCGCUUGU-GCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 24376 0.7 0.902986
Target:  5'- aGAGACGgGGCCcCGAGgACcGAGAGa -3'
miRNA:   3'- gCUCUGCgCCGGcGCUUgUG-CUUUUg -5'
10917 3' -53.3 NC_002794.1 + 25128 0.69 0.936316
Target:  5'- uCGAG-CGgGGCaCGCGcGCACGGuAGGCc -3'
miRNA:   3'- -GCUCuGCgCCG-GCGCuUGUGCU-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 29241 0.68 0.957661
Target:  5'- aGAGAUGaaGCUGCGAACA--AAAACa -3'
miRNA:   3'- gCUCUGCgcCGGCGCUUGUgcUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 32314 0.67 0.96779
Target:  5'- ---cGCGcCGGCCGCG-GC-CGGAGACa -3'
miRNA:   3'- gcucUGC-GCCGGCGCuUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 32603 0.66 0.984532
Target:  5'- cCGGGGcCGgGGCCGgGGAUcgggcccgccgACGAAGAg -3'
miRNA:   3'- -GCUCU-GCgCCGGCgCUUG-----------UGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 33113 0.7 0.890015
Target:  5'- aCGuGA-GCGGCCGCGGGCagACGAu--- -3'
miRNA:   3'- -GCuCUgCGCCGGCGCUUG--UGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 33449 0.67 0.978446
Target:  5'- -aGGACcucggGCGGCCGCcGGACGCGcccACg -3'
miRNA:   3'- gcUCUG-----CGCCGGCG-CUUGUGCuuuUG- -5'
10917 3' -53.3 NC_002794.1 + 34726 0.78 0.499029
Target:  5'- aCGAGGCgcggGCGGCCGCaGAgcGCGCGAcgGCg -3'
miRNA:   3'- -GCUCUG----CGCCGGCG-CU--UGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 34869 0.75 0.69927
Target:  5'- gCGGGcgcCGCGgacGCCGCGAACGCGGAAc- -3'
miRNA:   3'- -GCUCu--GCGC---CGGCGCUUGUGCUUUug -5'
10917 3' -53.3 NC_002794.1 + 35882 0.69 0.941047
Target:  5'- aCGAGAga-GGCCGuCGGACACaGAGACc -3'
miRNA:   3'- -GCUCUgcgCCGGC-GCUUGUGcUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 36583 0.7 0.890015
Target:  5'- cCGAGcAgGCGGuCCGCGugccACACGAGcGCc -3'
miRNA:   3'- -GCUC-UgCGCC-GGCGCu---UGUGCUUuUG- -5'
10917 3' -53.3 NC_002794.1 + 36908 0.7 0.909127
Target:  5'- aGAGGuCGCGGCgccggcccCGCGAcCGCGGAGGa -3'
miRNA:   3'- gCUCU-GCGCCG--------GCGCUuGUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 37273 0.68 0.961252
Target:  5'- gCGGGcGCGCGGgCGCGGcguacaacgACACGuaggGGAACg -3'
miRNA:   3'- -GCUC-UGCGCCgGCGCU---------UGUGC----UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 37750 0.73 0.785829
Target:  5'- gCGGcGGCGCGGCgGCGccgGCGGGAGCg -3'
miRNA:   3'- -GCU-CUGCGCCGgCGCuugUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 38162 0.74 0.719126
Target:  5'- gCGAGcAgGCGGCUGCGcucGGCgACGAAGGCg -3'
miRNA:   3'- -GCUC-UgCGCCGGCGC---UUG-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 38268 0.72 0.829568
Target:  5'- uGAGGCGCGGCC-CccGCGCGAcguAGCu -3'
miRNA:   3'- gCUCUGCGCCGGcGcuUGUGCUu--UUG- -5'
10917 3' -53.3 NC_002794.1 + 38455 0.74 0.72601
Target:  5'- gGAGccgGCGCGGCCGCGGcGCGCccuuuaugggcggaGGAAGCg -3'
miRNA:   3'- gCUC---UGCGCCGGCGCU-UGUG--------------CUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.