miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 40510 0.7 0.915035
Target:  5'- uCGAGuCaCGGCCGCcGACGCGccGACg -3'
miRNA:   3'- -GCUCuGcGCCGGCGcUUGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 40620 0.73 0.776638
Target:  5'- cCGAcucCGCGGaguCCGCGAGCGCGAgcuGAGCg -3'
miRNA:   3'- -GCUcu-GCGCC---GGCGCUUGUGCU---UUUG- -5'
10917 3' -53.3 NC_002794.1 + 41227 0.66 0.987647
Target:  5'- cCGGGGauuccucccacgcCGCGGCCGCcGACGcCGGcgGCc -3'
miRNA:   3'- -GCUCU-------------GCGCCGGCGcUUGU-GCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 42646 0.69 0.936316
Target:  5'- gGAGuCGCGGCCGaagcCGAcggcgccgccgGCACGggGuACg -3'
miRNA:   3'- gCUCuGCGCCGGC----GCU-----------UGUGCuuU-UG- -5'
10917 3' -53.3 NC_002794.1 + 43621 0.75 0.679191
Target:  5'- -aGGACGUGGCCGCcagGAGCugGuGGAACa -3'
miRNA:   3'- gcUCUGCGCCGGCG---CUUGugC-UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 43914 0.66 0.986238
Target:  5'- gGAGcgGCGCGGUCaGCcccgaGAAgACGGAGACc -3'
miRNA:   3'- gCUC--UGCGCCGG-CG-----CUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 44307 0.8 0.41664
Target:  5'- gCGAGGCGgGGagcgaCCGCGAGCGCGGcgGCg -3'
miRNA:   3'- -GCUCUGCgCC-----GGCGCUUGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 44361 0.68 0.964627
Target:  5'- cCGAGAgCGCGGCgggCGCGAcgucCGCGAc--- -3'
miRNA:   3'- -GCUCU-GCGCCG---GCGCUu---GUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 44701 0.68 0.957661
Target:  5'- cCGccGCcCGGCCGCGAcCGCGgcGACg -3'
miRNA:   3'- -GCucUGcGCCGGCGCUuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 46311 0.68 0.964627
Target:  5'- cCGAG-CGCGGCgGCGAcgGCGCc----- -3'
miRNA:   3'- -GCUCuGCGCCGgCGCU--UGUGcuuuug -5'
10917 3' -53.3 NC_002794.1 + 47753 0.7 0.890015
Target:  5'- --cGugGCGGCCGUGGuCGCGGcacAACg -3'
miRNA:   3'- gcuCugCGCCGGCGCUuGUGCUu--UUG- -5'
10917 3' -53.3 NC_002794.1 + 49528 0.67 0.970747
Target:  5'- uGGGuuCGCGcGCCGCGAGCA-GAuccuuGACc -3'
miRNA:   3'- gCUCu-GCGC-CGGCGCUUGUgCUu----UUG- -5'
10917 3' -53.3 NC_002794.1 + 50622 0.73 0.776638
Target:  5'- aCGAGcuGCuugcccguccgGCGGUCGCGAAUgaGCGAAAACa -3'
miRNA:   3'- -GCUC--UG-----------CGCCGGCGCUUG--UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 51176 0.66 0.989214
Target:  5'- --cGACGCGGCCGUucGC-CGAu--- -3'
miRNA:   3'- gcuCUGCGCCGGCGcuUGuGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 51280 0.67 0.973504
Target:  5'- -cAGGCGCGGCCcgccCGAACGgGcAGGCu -3'
miRNA:   3'- gcUCUGCGCCGGc---GCUUGUgCuUUUG- -5'
10917 3' -53.3 NC_002794.1 + 51982 0.69 0.931349
Target:  5'- uCGuGGCGCucGGCCGCu-AC-CGAGAGCa -3'
miRNA:   3'- -GCuCUGCG--CCGGCGcuUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 52612 0.69 0.934357
Target:  5'- cCGAGACGCccgcccgaccgccGCCGCGucgaACGGGAGCc -3'
miRNA:   3'- -GCUCUGCGc------------CGGCGCuug-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 55011 0.72 0.845877
Target:  5'- cCGGGcguccgccgccGCGCcGCCGCGAGCACGGc--- -3'
miRNA:   3'- -GCUC-----------UGCGcCGGCGCUUGUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 55217 0.67 0.978446
Target:  5'- gGAGGC-CGGCgGuCGAGC-CGAcGACg -3'
miRNA:   3'- gCUCUGcGCCGgC-GCUUGuGCUuUUG- -5'
10917 3' -53.3 NC_002794.1 + 55272 0.73 0.776638
Target:  5'- cCGGGGgGCGGCgGUGGcgGCgACGAGGGCg -3'
miRNA:   3'- -GCUCUgCGCCGgCGCU--UG-UGCUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.