miRNA display CGI


Results 61 - 80 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 55814 0.69 0.931349
Target:  5'- -cGGGCGCGGgCGCgcgcuGAugGCGAAGAg -3'
miRNA:   3'- gcUCUGCGCCgGCG-----CUugUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 55859 0.72 0.83536
Target:  5'- gGuGAUGCgGGCCGCGAucugcgcgcccaguGCACGAucauGGCg -3'
miRNA:   3'- gCuCUGCG-CCGGCGCU--------------UGUGCUu---UUG- -5'
10917 3' -53.3 NC_002794.1 + 56079 0.68 0.953848
Target:  5'- uGAGGgccaGCaGGCCGCGcAGCACGu--GCg -3'
miRNA:   3'- gCUCUg---CG-CCGGCGC-UUGUGCuuuUG- -5'
10917 3' -53.3 NC_002794.1 + 57613 0.68 0.953848
Target:  5'- cCGAGAagGCGGCCGaCGAcCugGccGACc -3'
miRNA:   3'- -GCUCUg-CGCCGGC-GCUuGugCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 59129 0.66 0.980644
Target:  5'- cCGAGgccgacuucGCGCagGGCCGCGucgcGCACGAc--- -3'
miRNA:   3'- -GCUC---------UGCG--CCGGCGCu---UGUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 59210 0.68 0.957661
Target:  5'- aCGucGGCGUcucGGCCGCG-GCGCGcGAGCu -3'
miRNA:   3'- -GCu-CUGCG---CCGGCGCuUGUGCuUUUG- -5'
10917 3' -53.3 NC_002794.1 + 61519 0.72 0.828733
Target:  5'- -cGGACgGCGGCCGCcGGCggccgccGCGAAGACg -3'
miRNA:   3'- gcUCUG-CGCCGGCGcUUG-------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 61559 0.67 0.978446
Target:  5'- cCGcGGCgGCGGCCGCcgucGAACACcuAGACc -3'
miRNA:   3'- -GCuCUG-CGCCGGCG----CUUGUGcuUUUG- -5'
10917 3' -53.3 NC_002794.1 + 61887 0.68 0.961252
Target:  5'- --cGGCGcCGcGCgGCGAGCGCGGcGAGCg -3'
miRNA:   3'- gcuCUGC-GC-CGgCGCUUGUGCU-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 61962 0.66 0.98267
Target:  5'- cCGAGGCcaGCGGCCGCcugcuGCAgGucAAGCu -3'
miRNA:   3'- -GCUCUG--CGCCGGCGcu---UGUgCu-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 62070 0.66 0.980644
Target:  5'- gCGGcGACGcCGGCgGCGAcgACGgcGACg -3'
miRNA:   3'- -GCU-CUGC-GCCGgCGCUugUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 62472 0.74 0.719126
Target:  5'- uCGAGGCGCGcCuCGaCGAGCGCGAGugGACg -3'
miRNA:   3'- -GCUCUGCGCcG-GC-GCUUGUGCUU--UUG- -5'
10917 3' -53.3 NC_002794.1 + 62706 0.66 0.982475
Target:  5'- -----gGCGGCCGCcGACGCGAcccagcgAGACg -3'
miRNA:   3'- gcucugCGCCGGCGcUUGUGCU-------UUUG- -5'
10917 3' -53.3 NC_002794.1 + 63474 0.7 0.896614
Target:  5'- aCGAGGCgGCGGCCGCcgu--CGAcGACg -3'
miRNA:   3'- -GCUCUG-CGCCGGCGcuuguGCUuUUG- -5'
10917 3' -53.3 NC_002794.1 + 63675 0.8 0.399481
Target:  5'- aCGAG-CGCGGCCGCGGcgACgACGAuGACg -3'
miRNA:   3'- -GCUCuGCGCCGGCGCU--UG-UGCUuUUG- -5'
10917 3' -53.3 NC_002794.1 + 64689 0.69 0.941047
Target:  5'- --cGACGaCGGCgagGCGAGCGCGGAcgagGACg -3'
miRNA:   3'- gcuCUGC-GCCGg--CGCUUGUGCUU----UUG- -5'
10917 3' -53.3 NC_002794.1 + 66742 0.69 0.945544
Target:  5'- -cGGugGCGGCgGCGcgUACGAccGCu -3'
miRNA:   3'- gcUCugCGCCGgCGCuuGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 67938 0.68 0.961252
Target:  5'- aCGGGGCGaUGGCCuCG-AC-CGAGGACg -3'
miRNA:   3'- -GCUCUGC-GCCGGcGCuUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 70254 0.72 0.821143
Target:  5'- aGcAGACGCgcagcgacggaGGCCGCGAAgGCcgGAGAGCa -3'
miRNA:   3'- gC-UCUGCG-----------CCGGCGCUUgUG--CUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 70301 0.71 0.875432
Target:  5'- gGGGGCcCGGgCGCGAAgagccgcuucgccCGCGAAGACg -3'
miRNA:   3'- gCUCUGcGCCgGCGCUU-------------GUGCUUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.