miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 194135 0.68 0.957661
Target:  5'- uGAGGCaGCGGCCGCaGcAGCGCccgcGAGCc -3'
miRNA:   3'- gCUCUG-CGCCGGCG-C-UUGUGcu--UUUG- -5'
10917 3' -53.3 NC_002794.1 + 192151 0.7 0.887991
Target:  5'- --cGGCGCGGUCGCGGcggaGCcugcgguagguccgGCGAAGGCg -3'
miRNA:   3'- gcuCUGCGCCGGCGCU----UG--------------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 192000 0.67 0.976068
Target:  5'- cCGGGACgguaGCGGCgGUGGcCGCGGcuGCu -3'
miRNA:   3'- -GCUCUG----CGCCGgCGCUuGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 191909 0.69 0.926147
Target:  5'- cCGGGAC-CGGCUgaaucgGCGAAgACGAGAGg -3'
miRNA:   3'- -GCUCUGcGCCGG------CGCUUgUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 190759 0.66 0.98267
Target:  5'- gGGGGCgGCGGCCGCGcguCcCGGuagauGAACu -3'
miRNA:   3'- gCUCUG-CGCCGGCGCuu-GuGCU-----UUUG- -5'
10917 3' -53.3 NC_002794.1 + 189786 0.66 0.989214
Target:  5'- gCGGGAUGCGgaaaucGCCGuCGAACcccgGCGGGcGCg -3'
miRNA:   3'- -GCUCUGCGC------CGGC-GCUUG----UGCUUuUG- -5'
10917 3' -53.3 NC_002794.1 + 189172 0.66 0.986238
Target:  5'- uCGuAGACGUagauGGCCGCGuGCGCcccccAGAACa -3'
miRNA:   3'- -GC-UCUGCG----CCGGCGCuUGUGc----UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 187941 0.67 0.970747
Target:  5'- gCGucACGCGuGCgcgCGCGAGCGCGGGAc- -3'
miRNA:   3'- -GCucUGCGC-CG---GCGCUUGUGCUUUug -5'
10917 3' -53.3 NC_002794.1 + 187586 0.7 0.902986
Target:  5'- --cGGCGCGGCCGCcguCGCGAc--- -3'
miRNA:   3'- gcuCUGCGCCGGCGcuuGUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 187489 0.67 0.976068
Target:  5'- cCGAgGACGaGGCCGCGcAgGCGGccaGGGCg -3'
miRNA:   3'- -GCU-CUGCgCCGGCGCuUgUGCU---UUUG- -5'
10917 3' -53.3 NC_002794.1 + 185766 0.72 0.803793
Target:  5'- --cGGCGCGGCCGCccgucacacgucGGccgGCGCGggGACc -3'
miRNA:   3'- gcuCUGCGCCGGCG------------CU---UGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 185471 0.69 0.936316
Target:  5'- cCGcGGGCgGCGGCCGCG-GCGaGggGACc -3'
miRNA:   3'- -GC-UCUG-CGCCGGCGCuUGUgCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 185425 0.66 0.986238
Target:  5'- uCGAcucGACGCGGCgccaugCGCGGACaggucuccGCGAcAAACg -3'
miRNA:   3'- -GCU---CUGCGCCG------GCGCUUG--------UGCU-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 185366 0.66 0.985233
Target:  5'- gCGGGcCGaacGCCGCGAGCgaggccagccagaagACGAGGGCg -3'
miRNA:   3'- -GCUCuGCgc-CGGCGCUUG---------------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 185227 0.67 0.970747
Target:  5'- aGAGuCGCGccgaccGCCGCGcACGagaGAAAGCg -3'
miRNA:   3'- gCUCuGCGC------CGGCGCuUGUg--CUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 185175 0.66 0.987796
Target:  5'- --cGGCGCGG-CGCGGucgGCGCGGucGGCg -3'
miRNA:   3'- gcuCUGCGCCgGCGCU---UGUGCUu-UUG- -5'
10917 3' -53.3 NC_002794.1 + 184596 0.68 0.961252
Target:  5'- ---cGCGCGGCCGCGGGauCGgcAACg -3'
miRNA:   3'- gcucUGCGCCGGCGCUUguGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 184504 0.67 0.978446
Target:  5'- cCGGGcgGCGCGGgccCCGCGcgcGGCGCGGGcGACg -3'
miRNA:   3'- -GCUC--UGCGCC---GGCGC---UUGUGCUU-UUG- -5'
10917 3' -53.3 NC_002794.1 + 184042 0.72 0.829568
Target:  5'- gCGcAGcGCGCGGUCGCGGGcCGCGGcgAAGCg -3'
miRNA:   3'- -GC-UC-UGCGCCGGCGCUU-GUGCU--UUUG- -5'
10917 3' -53.3 NC_002794.1 + 183513 0.71 0.868152
Target:  5'- cCGAGAcccauguCGCGGCCGUGcGCGCcccguccgcccGggGACa -3'
miRNA:   3'- -GCUCU-------GCGCCGGCGCuUGUG-----------CuuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.