miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 183477 0.69 0.926147
Target:  5'- gCGAGucCGCGGCC-CGAuccccGCGCGAAc-- -3'
miRNA:   3'- -GCUCu-GCGCCGGcGCU-----UGUGCUUuug -5'
10917 3' -53.3 NC_002794.1 + 183190 0.66 0.987796
Target:  5'- cCGAGACGC-GCCGC---CACGccGGCg -3'
miRNA:   3'- -GCUCUGCGcCGGCGcuuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 183155 0.68 0.964299
Target:  5'- gGAcACGCGGCCGggcugccCGAGCcgguCGggGACc -3'
miRNA:   3'- gCUcUGCGCCGGC-------GCUUGu---GCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 182457 0.66 0.986238
Target:  5'- gGAGAgCGCGGCgGUGcGCgGCGucAGCa -3'
miRNA:   3'- gCUCU-GCGCCGgCGCuUG-UGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 179988 0.67 0.976068
Target:  5'- -aAGGCgGUGGCCGCGAcggcgggcccgGcCACGAcGACg -3'
miRNA:   3'- gcUCUG-CGCCGGCGCU-----------U-GUGCUuUUG- -5'
10917 3' -53.3 NC_002794.1 + 179267 0.68 0.953848
Target:  5'- cCGAGACGCucaGGCUGacccaGAaaagACACGAgcgGAACg -3'
miRNA:   3'- -GCUCUGCG---CCGGCg----CU----UGUGCU---UUUG- -5'
10917 3' -53.3 NC_002794.1 + 178240 0.67 0.96779
Target:  5'- uGGGACGacgaGGCCgucgagggaaGCGGGCugacCGGAGACg -3'
miRNA:   3'- gCUCUGCg---CCGG----------CGCUUGu---GCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 176059 0.69 0.920709
Target:  5'- uGGGACGa-GCCGUGGuuGCGAGAAUg -3'
miRNA:   3'- gCUCUGCgcCGGCGCUugUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 175727 0.73 0.757882
Target:  5'- gCGAGgaGCGUGGCCGUGAGaGCGAGu-- -3'
miRNA:   3'- -GCUC--UGCGCCGGCGCUUgUGCUUuug -5'
10917 3' -53.3 NC_002794.1 + 166517 0.69 0.931349
Target:  5'- cCGAauACGUGGCCGCGAACucaGAAu-- -3'
miRNA:   3'- -GCUc-UGCGCCGGCGCUUGug-CUUuug -5'
10917 3' -53.3 NC_002794.1 + 162044 0.66 0.986238
Target:  5'- uCGGGGCGUGaGCCGCac-CGCGu-AACa -3'
miRNA:   3'- -GCUCUGCGC-CGGCGcuuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 157307 0.72 0.829568
Target:  5'- aGAcACGCGGCgCuCGAAgACGAAGACg -3'
miRNA:   3'- gCUcUGCGCCG-GcGCUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 156439 0.68 0.94981
Target:  5'- aGAGAC-CGGUCGCGc---CGAAGGCg -3'
miRNA:   3'- gCUCUGcGCCGGCGCuuguGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 156405 0.72 0.837815
Target:  5'- cCGGcGcCGCGGCCGCGGcCACGGccGGCg -3'
miRNA:   3'- -GCU-CuGCGCCGGCGCUuGUGCUu-UUG- -5'
10917 3' -53.3 NC_002794.1 + 155871 0.66 0.987796
Target:  5'- uCGGGuuuACGaCGGUCGUaGACACGAGAu- -3'
miRNA:   3'- -GCUC---UGC-GCCGGCGcUUGUGCUUUug -5'
10917 3' -53.3 NC_002794.1 + 153358 0.66 0.989214
Target:  5'- -aGGACGCGGCC-CGGcuGCGCGc---- -3'
miRNA:   3'- gcUCUGCGCCGGcGCU--UGUGCuuuug -5'
10917 3' -53.3 NC_002794.1 + 153295 0.7 0.915035
Target:  5'- cCGAGACGCaGGCCGgGGA-GCGGc--- -3'
miRNA:   3'- -GCUCUGCG-CCGGCgCUUgUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 152655 0.67 0.96779
Target:  5'- gCGAGACGuCGuGCucgagcaguauCGCGAGCugGggGuguGCg -3'
miRNA:   3'- -GCUCUGC-GC-CG-----------GCGCUUGugCuuU---UG- -5'
10917 3' -53.3 NC_002794.1 + 152045 0.66 0.986238
Target:  5'- cCGAGuucgcgacCGCGGCCGgcaaauacCGGAUcCGAGGACu -3'
miRNA:   3'- -GCUCu-------GCGCCGGC--------GCUUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 149959 0.72 0.812549
Target:  5'- uCGGGACGUGGCCgaccugccGCGGAC-CGGcgGCc -3'
miRNA:   3'- -GCUCUGCGCCGG--------CGCUUGuGCUuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.