miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 149859 0.68 0.94981
Target:  5'- aCGAGGaGCGGCCGCccGCuCGggGGg -3'
miRNA:   3'- -GCUCUgCGCCGGCGcuUGuGCuuUUg -5'
10917 3' -53.3 NC_002794.1 + 149621 0.67 0.976068
Target:  5'- gGGGACGUGGgacgCGCGAuACGCGugGAUg -3'
miRNA:   3'- gCUCUGCGCCg---GCGCU-UGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 149335 0.66 0.987796
Target:  5'- -cGGACcgaacCGGCCGgGGuCGCGggGGCg -3'
miRNA:   3'- gcUCUGc----GCCGGCgCUuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 149280 0.66 0.98267
Target:  5'- cCGGcGGCGCGGCgGCucgcuCACGggGGg -3'
miRNA:   3'- -GCU-CUGCGCCGgCGcuu--GUGCuuUUg -5'
10917 3' -53.3 NC_002794.1 + 148131 0.74 0.748335
Target:  5'- uCGGGcGCGgGGCCGCcGGgGCGAGGGCg -3'
miRNA:   3'- -GCUC-UGCgCCGGCGcUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 147224 0.69 0.931349
Target:  5'- cCGGGGCGuUGGCgCGaUGGGCcCGAGAGCa -3'
miRNA:   3'- -GCUCUGC-GCCG-GC-GCUUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 147142 0.69 0.931349
Target:  5'- uCGAGACGgccccggGGCCGCGAgggccaGCugGAccgacuGAACg -3'
miRNA:   3'- -GCUCUGCg------CCGGCGCU------UGugCU------UUUG- -5'
10917 3' -53.3 NC_002794.1 + 147065 0.67 0.97582
Target:  5'- -aGGACG-GaGCCGCGGGCgcccgguccaaggACGAAGGCg -3'
miRNA:   3'- gcUCUGCgC-CGGCGCUUG-------------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 146742 0.67 0.973504
Target:  5'- uGAcGACG-GGCCGCGGAU-CGggGGa -3'
miRNA:   3'- gCU-CUGCgCCGGCGCUUGuGCuuUUg -5'
10917 3' -53.3 NC_002794.1 + 146642 0.67 0.973504
Target:  5'- cCGGGA-GCGG-CGaCGAACACGAGc-- -3'
miRNA:   3'- -GCUCUgCGCCgGC-GCUUGUGCUUuug -5'
10917 3' -53.3 NC_002794.1 + 146594 0.66 0.989214
Target:  5'- --cGACGaaGCUGuCGAGCgACGAAGGCg -3'
miRNA:   3'- gcuCUGCgcCGGC-GCUUG-UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 145989 0.66 0.989078
Target:  5'- aGAG-CGCccagaacGGCCGCcgGGGC-CGGAGACg -3'
miRNA:   3'- gCUCuGCG-------CCGGCG--CUUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 145860 0.71 0.853748
Target:  5'- aCGAGcCGCcgagGGCCGCGAccggacCGCGAGAAg -3'
miRNA:   3'- -GCUCuGCG----CCGGCGCUu-----GUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 145806 0.69 0.931349
Target:  5'- aCGAcGACGCcGCCGCcggcggcgagccGAGCGCGucGACg -3'
miRNA:   3'- -GCU-CUGCGcCGGCG------------CUUGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 145522 0.68 0.94981
Target:  5'- gCGAGGC-CGGCC-CGAGCGCcucGGGCg -3'
miRNA:   3'- -GCUCUGcGCCGGcGCUUGUGcu-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 145443 0.68 0.960198
Target:  5'- aCGAGcuCGCGaGCCgGCGGACAgauggagcggucgcCGAAGGCc -3'
miRNA:   3'- -GCUCu-GCGC-CGG-CGCUUGU--------------GCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 145236 0.71 0.86889
Target:  5'- gGAGGCGCGcgcGCUGCGGAaGCGGAucGCg -3'
miRNA:   3'- gCUCUGCGC---CGGCGCUUgUGCUUu-UG- -5'
10917 3' -53.3 NC_002794.1 + 143542 0.8 0.425387
Target:  5'- gGAGGCGCGGCa-CGAGCACGguGGCc -3'
miRNA:   3'- gCUCUGCGCCGgcGCUUGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 142356 0.7 0.896614
Target:  5'- gGAGGCGgcggaGGCgGCGGAgGCGGAGGg -3'
miRNA:   3'- gCUCUGCg----CCGgCGCUUgUGCUUUUg -5'
10917 3' -53.3 NC_002794.1 + 142321 0.69 0.945544
Target:  5'- gCGGcGGCGCaGGCgGCGGagGCgGCGGAGGCg -3'
miRNA:   3'- -GCU-CUGCG-CCGgCGCU--UG-UGCUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.