Results 41 - 60 of 274 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 111167 | 0.66 | 0.989214 |
Target: 5'- -cAGACGCGGUgcaggGCGcGCACGAAcuCg -3' miRNA: 3'- gcUCUGCGCCGg----CGCuUGUGCUUuuG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 84003 | 0.66 | 0.989214 |
Target: 5'- aCGGGcACGacgGGCaCGaCGGGCACGAGcGACg -3' miRNA: 3'- -GCUC-UGCg--CCG-GC-GCUUGUGCUU-UUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 121391 | 0.66 | 0.989214 |
Target: 5'- cCGGGAcCGCGGCCgGCGccggGAcCGCGAc--- -3' miRNA: 3'- -GCUCU-GCGCCGG-CGC----UU-GUGCUuuug -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 146594 | 0.66 | 0.989214 |
Target: 5'- --cGACGaaGCUGuCGAGCgACGAAGGCg -3' miRNA: 3'- gcuCUGCgcCGGC-GCUUG-UGCUUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 153358 | 0.66 | 0.989214 |
Target: 5'- -aGGACGCGGCC-CGGcuGCGCGc---- -3' miRNA: 3'- gcUCUGCGCCGGcGCU--UGUGCuuuug -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 149335 | 0.66 | 0.987796 |
Target: 5'- -cGGACcgaacCGGCCGgGGuCGCGggGGCg -3' miRNA: 3'- gcUCUGc----GCCGGCgCUuGUGCuuUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 155871 | 0.66 | 0.987796 |
Target: 5'- uCGGGuuuACGaCGGUCGUaGACACGAGAu- -3' miRNA: 3'- -GCUC---UGC-GCCGGCGcUUGUGCUUUug -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 12065 | 0.66 | 0.986238 |
Target: 5'- uGGGcCGCGccGCCGaUGAACACGAcgcuGACc -3' miRNA: 3'- gCUCuGCGC--CGGC-GCUUGUGCUu---UUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 189172 | 0.66 | 0.986238 |
Target: 5'- uCGuAGACGUagauGGCCGCGuGCGCcccccAGAACa -3' miRNA: 3'- -GC-UCUGCG----CCGGCGCuUGUGc----UUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 129506 | 0.66 | 0.986238 |
Target: 5'- cCGuGuCGCcGCCGCGGucgGCGCGcuGACa -3' miRNA: 3'- -GCuCuGCGcCGGCGCU---UGUGCuuUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 119441 | 0.66 | 0.986238 |
Target: 5'- --cGACgGCGGCgGCGGugGCGGc--- -3' miRNA: 3'- gcuCUG-CGCCGgCGCUugUGCUuuug -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 152045 | 0.66 | 0.986238 |
Target: 5'- cCGAGuucgcgacCGCGGCCGgcaaauacCGGAUcCGAGGACu -3' miRNA: 3'- -GCUCu-------GCGCCGGC--------GCUUGuGCUUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 41227 | 0.66 | 0.987647 |
Target: 5'- cCGGGGauuccucccacgcCGCGGCCGCcGACGcCGGcgGCc -3' miRNA: 3'- -GCUCU-------------GCGCCGGCGcUUGU-GCUuuUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 105716 | 0.66 | 0.987647 |
Target: 5'- uCGAGGCgaucgcgGCGGCCGU---CGgGAAAGCg -3' miRNA: 3'- -GCUCUG-------CGCCGGCGcuuGUgCUUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 117367 | 0.66 | 0.987796 |
Target: 5'- gGAGcgGCG-GGCCGCcuGCACGGucGCg -3' miRNA: 3'- gCUC--UGCgCCGGCGcuUGUGCUuuUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 70742 | 0.66 | 0.987796 |
Target: 5'- gGAGcaGCGCGaGcCCGgGAaacaGCugGGAGACg -3' miRNA: 3'- gCUC--UGCGC-C-GGCgCU----UGugCUUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 142203 | 0.66 | 0.987647 |
Target: 5'- gCGGGAaGCGGCgGCGGcagcgGCggugcggggagcgGCGGAGGCg -3' miRNA: 3'- -GCUCUgCGCCGgCGCU-----UG-------------UGCUUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 91140 | 0.66 | 0.987796 |
Target: 5'- gGAGGCGCGgacgguGCUGCuGGGCGCcguGGAGGCc -3' miRNA: 3'- gCUCUGCGC------CGGCG-CUUGUG---CUUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 89386 | 0.66 | 0.987796 |
Target: 5'- uCGGGA-GCGGUCGCGGugAgGuccguGGAGCg -3' miRNA: 3'- -GCUCUgCGCCGGCGCUugUgC-----UUUUG- -5' |
|||||||
10917 | 3' | -53.3 | NC_002794.1 | + | 86900 | 0.66 | 0.987796 |
Target: 5'- --cGGCGgGGCCGCcGACcCGguGACg -3' miRNA: 3'- gcuCUGCgCCGGCGcUUGuGCuuUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home