miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 3' -53.3 NC_002794.1 + 142203 0.66 0.987647
Target:  5'- gCGGGAaGCGGCgGCGGcagcgGCggugcggggagcgGCGGAGGCg -3'
miRNA:   3'- -GCUCUgCGCCGgCGCU-----UG-------------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 70742 0.66 0.987796
Target:  5'- gGAGcaGCGCGaGcCCGgGAaacaGCugGGAGACg -3'
miRNA:   3'- gCUC--UGCGC-C-GGCgCU----UGugCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 129200 0.66 0.986238
Target:  5'- uCGAcGACcgaGCGGCCGaCGGcgguggauagGCGCGAAcgGGCg -3'
miRNA:   3'- -GCU-CUG---CGCCGGC-GCU----------UGUGCUU--UUG- -5'
10917 3' -53.3 NC_002794.1 + 162044 0.66 0.986238
Target:  5'- uCGGGGCGUGaGCCGCac-CGCGu-AACa -3'
miRNA:   3'- -GCUCUGCGC-CGGCGcuuGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 138291 0.66 0.986238
Target:  5'- gCGGGugGCGGCCuuGGcccGCACGc---- -3'
miRNA:   3'- -GCUCugCGCCGGcgCU---UGUGCuuuug -5'
10917 3' -53.3 NC_002794.1 + 43914 0.66 0.986238
Target:  5'- gGAGcgGCGCGGUCaGCcccgaGAAgACGGAGACc -3'
miRNA:   3'- gCUC--UGCGCCGG-CG-----CUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 185366 0.66 0.985233
Target:  5'- gCGGGcCGaacGCCGCGAGCgaggccagccagaagACGAGGGCg -3'
miRNA:   3'- -GCUCuGCgc-CGGCGCUUG---------------UGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 131876 0.66 0.985233
Target:  5'- uGGGcgcCGCGGCCucaucucggucgcgcGCGGGCACGuguaGGGACa -3'
miRNA:   3'- gCUCu--GCGCCGG---------------CGCUUGUGC----UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 121735 0.66 0.984532
Target:  5'- aCGAcGACGagcaCGGCgGCGAG-ACGGAGAUg -3'
miRNA:   3'- -GCU-CUGC----GCCGgCGCUUgUGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 120104 0.66 0.984532
Target:  5'- cCGAGcGCGCcGCgCGUGAcgcGCGCGAcgGCg -3'
miRNA:   3'- -GCUC-UGCGcCG-GCGCU---UGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 185425 0.66 0.986238
Target:  5'- uCGAcucGACGCGGCgccaugCGCGGACaggucuccGCGAcAAACg -3'
miRNA:   3'- -GCU---CUGCGCCG------GCGCUUG--------UGCU-UUUG- -5'
10917 3' -53.3 NC_002794.1 + 182457 0.66 0.986238
Target:  5'- gGAGAgCGCGGCgGUGcGCgGCGucAGCa -3'
miRNA:   3'- gCUCU-GCGCCGgCGCuUG-UGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 117367 0.66 0.987796
Target:  5'- gGAGcgGCG-GGCCGCcuGCACGGucGCg -3'
miRNA:   3'- gCUC--UGCgCCGGCGcuUGUGCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 105716 0.66 0.987647
Target:  5'- uCGAGGCgaucgcgGCGGCCGU---CGgGAAAGCg -3'
miRNA:   3'- -GCUCUG-------CGCCGGCGcuuGUgCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 41227 0.66 0.987647
Target:  5'- cCGGGGauuccucccacgcCGCGGCCGCcGACGcCGGcgGCc -3'
miRNA:   3'- -GCUCU-------------GCGCCGGCGcUUGU-GCUuuUG- -5'
10917 3' -53.3 NC_002794.1 + 152045 0.66 0.986238
Target:  5'- cCGAGuucgcgacCGCGGCCGgcaaauacCGGAUcCGAGGACu -3'
miRNA:   3'- -GCUCu-------GCGCCGGC--------GCUUGuGCUUUUG- -5'
10917 3' -53.3 NC_002794.1 + 119441 0.66 0.986238
Target:  5'- --cGACgGCGGCgGCGGugGCGGc--- -3'
miRNA:   3'- gcuCUG-CGCCGgCGCUugUGCUuuug -5'
10917 3' -53.3 NC_002794.1 + 129506 0.66 0.986238
Target:  5'- cCGuGuCGCcGCCGCGGucgGCGCGcuGACa -3'
miRNA:   3'- -GCuCuGCGcCGGCGCU---UGUGCuuUUG- -5'
10917 3' -53.3 NC_002794.1 + 189172 0.66 0.986238
Target:  5'- uCGuAGACGUagauGGCCGCGuGCGCcccccAGAACa -3'
miRNA:   3'- -GC-UCUGCG----CCGGCGCuUGUGc----UUUUG- -5'
10917 3' -53.3 NC_002794.1 + 12065 0.66 0.986238
Target:  5'- uGGGcCGCGccGCCGaUGAACACGAcgcuGACc -3'
miRNA:   3'- gCUCuGCGC--CGGC-GCUUGUGCUu---UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.