miRNA display CGI


Results 1 - 20 of 326 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 91876 0.65 0.892214
Target:  5'- gGGGUgg-CGG-CG-GCGGCCGcgacgagcaguucACGCCg -3'
miRNA:   3'- -CCCGagaGCCuGCuUGCCGGC-------------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 3358 0.65 0.892214
Target:  5'- gGGGUggccgauUCUgGGAaaaagcgGAACGaGCCGGcCGCCu -3'
miRNA:   3'- -CCCG-------AGAgCCUg------CUUGC-CGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 22858 0.66 0.886454
Target:  5'- aGGaUCcCGGACGuccCGGCCGuCGCg -3'
miRNA:   3'- cCCgAGaGCCUGCuu-GCCGGCuGCGg -5'
10917 5' -59.1 NC_002794.1 + 57975 0.66 0.886454
Target:  5'- -uGCUCUacGACG-GCGaGCCGACGCg -3'
miRNA:   3'- ccCGAGAgcCUGCuUGC-CGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 180860 0.66 0.886454
Target:  5'- cGGcCUCgUCGGAgGcGGCGGauCCGGCGCg -3'
miRNA:   3'- cCC-GAG-AGCCUgC-UUGCC--GGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 85940 0.66 0.886454
Target:  5'- cGGGCUCggaaccgaccCGGaACGGggccGCGGCCcucucaucgGACcGCCg -3'
miRNA:   3'- -CCCGAGa---------GCC-UGCU----UGCCGG---------CUG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 51155 0.66 0.886454
Target:  5'- -cGCUCgaCGGAcacacccccuCGAcGCGGCCGuuCGCCg -3'
miRNA:   3'- ccCGAGa-GCCU----------GCU-UGCCGGCu-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 90483 0.66 0.886454
Target:  5'- gGGGCcgccgUCcCGcGCGAuCGGCCGucccCGCCg -3'
miRNA:   3'- -CCCG-----AGaGCcUGCUuGCCGGCu---GCGG- -5'
10917 5' -59.1 NC_002794.1 + 121488 0.66 0.886454
Target:  5'- cGGU--UCGGAC--GCGGCCucCGCCg -3'
miRNA:   3'- cCCGagAGCCUGcuUGCCGGcuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 182194 0.66 0.886454
Target:  5'- gGGGC-CUCGG-CGc-CGGCgucGCGCCa -3'
miRNA:   3'- -CCCGaGAGCCuGCuuGCCGgc-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 166753 0.66 0.886454
Target:  5'- cGGGCUC-CGGcugacgcguauUGGAUGGCCGucgacggagaACGUCg -3'
miRNA:   3'- -CCCGAGaGCCu----------GCUUGCCGGC----------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 141754 0.66 0.886454
Target:  5'- -cGUaCUUGGACGAGCGGuUCGAUuCCg -3'
miRNA:   3'- ccCGaGAGCCUGCUUGCC-GGCUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 90704 0.66 0.886454
Target:  5'- cGGCa---GGACGAAUGGUgCGACGUg -3'
miRNA:   3'- cCCGagagCCUGCUUGCCG-GCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 192813 0.66 0.886454
Target:  5'- -uGCUCcacGugGAACaGGCCGGuCGCCa -3'
miRNA:   3'- ccCGAGagcCugCUUG-CCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 90845 0.66 0.885804
Target:  5'- aGGGCggCgugCuGACGAAagucacuuccaugUGGCCGGcCGCCu -3'
miRNA:   3'- -CCCGa-Ga--GcCUGCUU-------------GCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 147024 0.66 0.885152
Target:  5'- cGGcGCUCggucuaaGGACGAagccgucgGCGGCCGGucuaaggacggaGCCg -3'
miRNA:   3'- -CC-CGAGag-----CCUGCU--------UGCCGGCUg-----------CGG- -5'
10917 5' -59.1 NC_002794.1 + 142069 0.66 0.882524
Target:  5'- cGGGCUcCUCGGuCaAACcguGGCCGGaauuuccgaacaagcCGCCu -3'
miRNA:   3'- -CCCGA-GAGCCuGcUUG---CCGGCU---------------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 100800 0.66 0.882524
Target:  5'- cGGCcgCUucugcgccuacgugcCGGGCGGcgGgGGCCGGCaGCCg -3'
miRNA:   3'- cCCGa-GA---------------GCCUGCU--UgCCGGCUG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 92482 0.66 0.879865
Target:  5'- cGGGC-CUCaaccggugcguGGACGAgGCGGCCaugGCCc -3'
miRNA:   3'- -CCCGaGAG-----------CCUGCU-UGCCGGcugCGG- -5'
10917 5' -59.1 NC_002794.1 + 49600 0.66 0.879865
Target:  5'- -cGCgaUCGG-CG-ACGGCgGGCGCCg -3'
miRNA:   3'- ccCGagAGCCuGCuUGCCGgCUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.