Results 41 - 60 of 326 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10917 | 5' | -59.1 | NC_002794.1 | + | 121488 | 0.66 | 0.886454 |
Target: 5'- cGGU--UCGGAC--GCGGCCucCGCCg -3' miRNA: 3'- cCCGagAGCCUGcuUGCCGGcuGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 182194 | 0.66 | 0.886454 |
Target: 5'- gGGGC-CUCGG-CGc-CGGCgucGCGCCa -3' miRNA: 3'- -CCCGaGAGCCuGCuuGCCGgc-UGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 166753 | 0.66 | 0.886454 |
Target: 5'- cGGGCUC-CGGcugacgcguauUGGAUGGCCGucgacggagaACGUCg -3' miRNA: 3'- -CCCGAGaGCCu----------GCUUGCCGGC----------UGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 141754 | 0.66 | 0.886454 |
Target: 5'- -cGUaCUUGGACGAGCGGuUCGAUuCCg -3' miRNA: 3'- ccCGaGAGCCUGCUUGCC-GGCUGcGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 90704 | 0.66 | 0.886454 |
Target: 5'- cGGCa---GGACGAAUGGUgCGACGUg -3' miRNA: 3'- cCCGagagCCUGCUUGCCG-GCUGCGg -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 147024 | 0.66 | 0.885152 |
Target: 5'- cGGcGCUCggucuaaGGACGAagccgucgGCGGCCGGucuaaggacggaGCCg -3' miRNA: 3'- -CC-CGAGag-----CCUGCU--------UGCCGGCUg-----------CGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 142069 | 0.66 | 0.882524 |
Target: 5'- cGGGCUcCUCGGuCaAACcguGGCCGGaauuuccgaacaagcCGCCu -3' miRNA: 3'- -CCCGA-GAGCCuGcUUG---CCGGCU---------------GCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 100800 | 0.66 | 0.882524 |
Target: 5'- cGGCcgCUucugcgccuacgugcCGGGCGGcgGgGGCCGGCaGCCg -3' miRNA: 3'- cCCGa-GA---------------GCCUGCU--UgCCGGCUG-CGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 149838 | 0.66 | 0.875817 |
Target: 5'- cGGGCgg--GGACGAggacggggacgaggaGCGGCCGccCGCUc -3' miRNA: 3'- -CCCGagagCCUGCU---------------UGCCGGCu-GCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 109536 | 0.66 | 0.879195 |
Target: 5'- cGGCg-UCGGGcCGGGCGGaCCGGucuaccuCGCCc -3' miRNA: 3'- cCCGagAGCCU-GCUUGCC-GGCU-------GCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 146315 | 0.66 | 0.876496 |
Target: 5'- cGGGCUCgccgacgcgcggCGGAuuCGAccccgucgucgaucGCGGCgGcCGCCc -3' miRNA: 3'- -CCCGAGa-----------GCCU--GCU--------------UGCCGgCuGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 105764 | 0.66 | 0.879865 |
Target: 5'- -cGUUCaUCGGGguCGGugGGCCG-CGUCg -3' miRNA: 3'- ccCGAG-AGCCU--GCUugCCGGCuGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 106987 | 0.66 | 0.879865 |
Target: 5'- cGGCacggCGGugGcggcGCuGGCCGACGCg -3' miRNA: 3'- cCCGaga-GCCugCu---UG-CCGGCUGCGg -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 21916 | 0.66 | 0.879865 |
Target: 5'- uGGCgg-CGGAgaCGAcggcgGCGGCgCGGCGCUc -3' miRNA: 3'- cCCGagaGCCU--GCU-----UGCCG-GCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 17444 | 0.66 | 0.879865 |
Target: 5'- cGGCgCUCGGGCccGCGaCCGAgGUCg -3' miRNA: 3'- cCCGaGAGCCUGcuUGCcGGCUgCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 48139 | 0.66 | 0.879865 |
Target: 5'- aGGGCUCgaagCccucGACGA--GGCagCGGCGCCg -3' miRNA: 3'- -CCCGAGa---Gc---CUGCUugCCG--GCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 90936 | 0.66 | 0.879865 |
Target: 5'- cGGCgacgUGGGCGGGCugugcGCCGAgGCCc -3' miRNA: 3'- cCCGaga-GCCUGCUUGc----CGGCUgCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 49600 | 0.66 | 0.879865 |
Target: 5'- -cGCgaUCGG-CG-ACGGCgGGCGCCg -3' miRNA: 3'- ccCGagAGCCuGCuUGCCGgCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 92482 | 0.66 | 0.879865 |
Target: 5'- cGGGC-CUCaaccggugcguGGACGAgGCGGCCaugGCCc -3' miRNA: 3'- -CCCGaGAG-----------CCUGCU-UGCCGGcugCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 97080 | 0.66 | 0.879865 |
Target: 5'- -cGCUUcgcgCGGACGAucacguGCGcGCCcuacGACGCCa -3' miRNA: 3'- ccCGAGa---GCCUGCU------UGC-CGG----CUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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