Results 61 - 80 of 326 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10917 | 5' | -59.1 | NC_002794.1 | + | 90936 | 0.66 | 0.879865 |
Target: 5'- cGGCgacgUGGGCGGGCugugcGCCGAgGCCc -3' miRNA: 3'- cCCGaga-GCCUGCUUGc----CGGCUgCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 48139 | 0.66 | 0.879865 |
Target: 5'- aGGGCUCgaagCccucGACGA--GGCagCGGCGCCg -3' miRNA: 3'- -CCCGAGa---Gc---CUGCUugCCG--GCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 17444 | 0.66 | 0.879865 |
Target: 5'- cGGCgCUCGGGCccGCGaCCGAgGUCg -3' miRNA: 3'- cCCGaGAGCCUGcuUGCcGGCUgCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 21916 | 0.66 | 0.879865 |
Target: 5'- uGGCgg-CGGAgaCGAcggcgGCGGCgCGGCGCUc -3' miRNA: 3'- cCCGagaGCCU--GCU-----UGCCG-GCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 105467 | 0.67 | 0.844058 |
Target: 5'- -cGUUCUgGGACG-ACGaGCCGuCGUCu -3' miRNA: 3'- ccCGAGAgCCUGCuUGC-CGGCuGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 124382 | 0.67 | 0.844058 |
Target: 5'- -cGC-CUCGGuCGcGGCGGCgCGuCGCCg -3' miRNA: 3'- ccCGaGAGCCuGC-UUGCCG-GCuGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 141446 | 0.67 | 0.844058 |
Target: 5'- gGGGCgC-CGG--GAGCGGCgCGGCGUCc -3' miRNA: 3'- -CCCGaGaGCCugCUUGCCG-GCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 66654 | 0.67 | 0.844058 |
Target: 5'- gGGGCa-UCGGuaACGGcgucguggucaACGGCCccGGCGCCc -3' miRNA: 3'- -CCCGagAGCC--UGCU-----------UGCCGG--CUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 83892 | 0.67 | 0.844058 |
Target: 5'- cGGGCUCggCGcccGACGAGCccGGCacccuCGCCg -3' miRNA: 3'- -CCCGAGa-GC---CUGCUUG--CCGgcu--GCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 115917 | 0.67 | 0.844058 |
Target: 5'- gGGGUggaCUUGGcGCGGcgGCgGGCCGGCccGCCg -3' miRNA: 3'- -CCCGa--GAGCC-UGCU--UG-CCGGCUG--CGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 22251 | 0.67 | 0.844058 |
Target: 5'- aGGCacgCgaaCGGGCGGACGuGCagaGACGCa -3' miRNA: 3'- cCCGa--Ga--GCCUGCUUGC-CGg--CUGCGg -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 85284 | 0.67 | 0.84709 |
Target: 5'- cGGCUC-CGGuC-AGCGGCUGAgacgaggcgacgaccCGCCg -3' miRNA: 3'- cCCGAGaGCCuGcUUGCCGGCU---------------GCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 128116 | 0.67 | 0.846335 |
Target: 5'- gGGGCUCggCGGauacccucaucguGCGAggaagaagcgacgcgACGGCgGcucGCGCCg -3' miRNA: 3'- -CCCGAGa-GCC-------------UGCU---------------UGCCGgC---UGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 110266 | 0.67 | 0.844058 |
Target: 5'- cGGCg-UCGcGACG-GCGGCCGcCGUCc -3' miRNA: 3'- cCCGagAGC-CUGCuUGCCGGCuGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 131551 | 0.67 | 0.851585 |
Target: 5'- cGGC-CUCGcccGugGu-CGGCgCGGCGCCc -3' miRNA: 3'- cCCGaGAGC---CugCuuGCCG-GCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 130252 | 0.67 | 0.851585 |
Target: 5'- aGGUUCUgCGGGaacagcucgaaGAGCGGuuGAgcCGCCg -3' miRNA: 3'- cCCGAGA-GCCUg----------CUUGCCggCU--GCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 123770 | 0.67 | 0.85084 |
Target: 5'- cGGGCg--UGGACGccuccguguuggaGGCGG-UGGCGCCg -3' miRNA: 3'- -CCCGagaGCCUGC-------------UUGCCgGCUGCGG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 133491 | 0.67 | 0.851585 |
Target: 5'- uGGCUUUCGcGGCGAccCGuCCGACGgCg -3' miRNA: 3'- cCCGAGAGC-CUGCUu-GCcGGCUGCgG- -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 138845 | 0.67 | 0.851585 |
Target: 5'- cGGGCUCUCuggaaucgcgGGACucuCGGCCu-CGCg -3' miRNA: 3'- -CCCGAGAG----------CCUGcuuGCCGGcuGCGg -5' |
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10917 | 5' | -59.1 | NC_002794.1 | + | 121777 | 0.67 | 0.841767 |
Target: 5'- aGGCgccgccgaucccccCGGccaccGCGAcCGGCCGGCGCCu -3' miRNA: 3'- cCCGaga-----------GCC-----UGCUuGCCGGCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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