miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 44 1.13 0.001502
Target:  5'- cGGGCUCUCGGACGAACGGCCGACGCCc -3'
miRNA:   3'- -CCCGAGAGCCUGCUUGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 92329 0.82 0.160268
Target:  5'- gGGGC-C-CGGGCGGGCGGCuCGGCGUCa -3'
miRNA:   3'- -CCCGaGaGCCUGCUUGCCG-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 12199 0.82 0.160268
Target:  5'- cGGGCgccgCUCGGACGugccGGCGGCgucggCGGCGCCg -3'
miRNA:   3'- -CCCGa---GAGCCUGC----UUGCCG-----GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 70214 0.81 0.193884
Target:  5'- -aGCUCgcccggacggUCGGGCGGGCGGCCGGcCGCCc -3'
miRNA:   3'- ccCGAG----------AGCCUGCUUGCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 40477 0.8 0.203203
Target:  5'- cGGGCggCUCau-CGAACGGCCGGCGCUc -3'
miRNA:   3'- -CCCGa-GAGccuGCUUGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 44244 0.8 0.217908
Target:  5'- cGGGCggCUCGGugcCGGGCGGCuCGGcCGCCg -3'
miRNA:   3'- -CCCGa-GAGCCu--GCUUGCCG-GCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 150784 0.79 0.231912
Target:  5'- cGGGCUCgugCGacuccaggccccgcGGCGGACGGCCGA-GCCg -3'
miRNA:   3'- -CCCGAGa--GC--------------CUGCUUGCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 84022 0.79 0.250049
Target:  5'- cGGGCacgagcgacgCgagCGGcACGAACGGCaCGACGCCg -3'
miRNA:   3'- -CCCGa---------Ga--GCC-UGCUUGCCG-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 58072 0.78 0.279738
Target:  5'- cGGCggcgGGACGGGCGGcCCGGCGCCc -3'
miRNA:   3'- cCCGagagCCUGCUUGCC-GGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 106384 0.78 0.292377
Target:  5'- aGGGCagacggCGGGCGAACGGUCGgaccccggcgGCGCCg -3'
miRNA:   3'- -CCCGaga---GCCUGCUUGCCGGC----------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 48580 0.78 0.292377
Target:  5'- uGGGCgagC-CGGAgGAGCGGCgCGuCGCCg -3'
miRNA:   3'- -CCCGa--GaGCCUgCUUGCCG-GCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 156384 0.78 0.292377
Target:  5'- cGGGgUCUUcuucuaGAGCGGCCGGCGCCg -3'
miRNA:   3'- -CCCgAGAGccug--CUUGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 32842 0.77 0.305457
Target:  5'- cGGCUCaUCGGuaGCGGcaGCGGCCGA-GCCg -3'
miRNA:   3'- cCCGAG-AGCC--UGCU--UGCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 150199 0.77 0.325911
Target:  5'- gGGGC-CUCacGACGAGCGGCUGcUGCCg -3'
miRNA:   3'- -CCCGaGAGc-CUGCUUGCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 43669 0.76 0.332951
Target:  5'- cGGGCUCUCGGGCccGGgcGCGGaCC-AUGCCg -3'
miRNA:   3'- -CCCGAGAGCCUG--CU--UGCC-GGcUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 64802 0.76 0.332951
Target:  5'- cGGCgagCgacgccgCGGACGGcgGCGaGCCGGCGCCg -3'
miRNA:   3'- cCCGa--Ga------GCCUGCU--UGC-CGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 123812 0.76 0.332951
Target:  5'- gGGGCg--CGGACGAGCaGGagCGGCGCCc -3'
miRNA:   3'- -CCCGagaGCCUGCUUG-CCg-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 183580 0.76 0.339382
Target:  5'- cGGGC-CUUuaauacgguggGGGCGGaggggggccgcgcGCGGCCGGCGCCc -3'
miRNA:   3'- -CCCGaGAG-----------CCUGCU-------------UGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 182972 0.76 0.340102
Target:  5'- cGGCUcCUCGuuCGAgccgACGGCCGGCGCUu -3'
miRNA:   3'- cCCGA-GAGCcuGCU----UGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 127724 0.76 0.340102
Target:  5'- gGGGCUCgCGGACGGcaccgaACGGCCGGagGaCCg -3'
miRNA:   3'- -CCCGAGaGCCUGCU------UGCCGGCUg-C-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.