miRNA display CGI


Results 21 - 40 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 68285 0.76 0.345174
Target:  5'- cGGGCcagC-CGGGCGuacgaacgccucguGGCGGCCGACGCg -3'
miRNA:   3'- -CCCGa--GaGCCUGC--------------UUGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 50579 0.76 0.347364
Target:  5'- cGGCgugCgcggCGGcUGggUGGCCGGCGCCg -3'
miRNA:   3'- cCCGa--Ga---GCCuGCuuGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 150585 0.76 0.347364
Target:  5'- -uGCcCUCGGGCGcccgagGACGGCCGgGCGCCg -3'
miRNA:   3'- ccCGaGAGCCUGC------UUGCCGGC-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 78311 0.76 0.352512
Target:  5'- uGGCUCUCGcccucucccggcgcGACGGGCGGa-GGCGCCg -3'
miRNA:   3'- cCCGAGAGC--------------CUGCUUGCCggCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 44182 0.76 0.362217
Target:  5'- cGGCUCgucgacucCGGGCGAAgccgGGCCGACGUCc -3'
miRNA:   3'- cCCGAGa-------GCCUGCUUg---CCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 137361 0.76 0.369807
Target:  5'- cGGGgUCUucuucgagcCGGGCGAGC-GCCGACGCg -3'
miRNA:   3'- -CCCgAGA---------GCCUGCUUGcCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 11631 0.75 0.393223
Target:  5'- aGGCUCgacccacaGcGACGGGCGGCCGACGaCg -3'
miRNA:   3'- cCCGAGag------C-CUGCUUGCCGGCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 34363 0.75 0.393223
Target:  5'- -cGCUCUaccUGGACGAcaacACGGCgGugGCCa -3'
miRNA:   3'- ccCGAGA---GCCUGCU----UGCCGgCugCGG- -5'
10917 5' -59.1 NC_002794.1 + 137728 0.75 0.393223
Target:  5'- uGGaGCg-UCaGGCGAugGGCCGACGCUu -3'
miRNA:   3'- -CC-CGagAGcCUGCUugCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 148561 0.75 0.400433
Target:  5'- cGGCUCuuucugcUCGGACuGAucugcgagcACGGCCGGcCGCCg -3'
miRNA:   3'- cCCGAG-------AGCCUG-CU---------UGCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 135454 0.75 0.40124
Target:  5'- cGGGCUCcCgGGGCccGCGGCCGAcgacgaCGCCg -3'
miRNA:   3'- -CCCGAGaG-CCUGcuUGCCGGCU------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 68788 0.75 0.404475
Target:  5'- cGGCUCUCgcgccccggcuaacaGGACGAcucgagacagACGG-CGACGCCg -3'
miRNA:   3'- cCCGAGAG---------------CCUGCU----------UGCCgGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 121182 0.75 0.412636
Target:  5'- cGGGCUCcgcacgacgauccgaUCGGGguCGAcuucggggGCGGCCGcCGCCg -3'
miRNA:   3'- -CCCGAG---------------AGCCU--GCU--------UGCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 102710 0.75 0.41758
Target:  5'- cGGGCcgC-CGGACGGGCGcGCCaacGCGCCc -3'
miRNA:   3'- -CCCGa-GaGCCUGCUUGC-CGGc--UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 93987 0.75 0.41758
Target:  5'- -cGCgCUCGGcGCGGAC-GCCGGCGCCg -3'
miRNA:   3'- ccCGaGAGCC-UGCUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 131011 0.75 0.41758
Target:  5'- uGGCUCacgggUCGGugGucgugcggcGCGGCCGGCuGCCg -3'
miRNA:   3'- cCCGAG-----AGCCugCu--------UGCCGGCUG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 145565 0.74 0.423395
Target:  5'- cGGUUCgCGGACGAgcgccgacggagcgGCGGCCGGCuCCc -3'
miRNA:   3'- cCCGAGaGCCUGCU--------------UGCCGGCUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 54227 0.74 0.425901
Target:  5'- -cGCcgUCUCGGAUGaAGCGGCCGAgCGCg -3'
miRNA:   3'- ccCG--AGAGCCUGC-UUGCCGGCU-GCGg -5'
10917 5' -59.1 NC_002794.1 + 182323 0.74 0.43432
Target:  5'- cGGGCggUCGGGCGGGCGGgCGA-GCg -3'
miRNA:   3'- -CCCGagAGCCUGCUUGCCgGCUgCGg -5'
10917 5' -59.1 NC_002794.1 + 145794 0.74 0.442835
Target:  5'- cGGCcggCUCGGACG-ACGacGCCGcCGCCg -3'
miRNA:   3'- cCCGa--GAGCCUGCuUGC--CGGCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.