miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 44709 0.74 0.451442
Target:  5'- cGGCcgCgacCGcGGCGAcguCGGCCGGCGCCg -3'
miRNA:   3'- cCCGa-Ga--GC-CUGCUu--GCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 13264 0.74 0.451442
Target:  5'- cGGGCUg-UGGugGAGCGGCCGcUGUUg -3'
miRNA:   3'- -CCCGAgaGCCugCUUGCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 144760 0.74 0.451442
Target:  5'- uGGUUCUgGGaACGcAGCuGGCCGGCGUCg -3'
miRNA:   3'- cCCGAGAgCC-UGC-UUG-CCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 34849 0.74 0.451442
Target:  5'- cGGGCg-UCGGAgCGGGCGccGCgGGCGCCg -3'
miRNA:   3'- -CCCGagAGCCU-GCUUGC--CGgCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 83173 0.74 0.460141
Target:  5'- -cGCUCUCGGuCGAgcGCGGCUu-CGCCa -3'
miRNA:   3'- ccCGAGAGCCuGCU--UGCCGGcuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 19597 0.74 0.460141
Target:  5'- cGGC-C-CGG-CGAGCGGCCGA-GCCa -3'
miRNA:   3'- cCCGaGaGCCuGCUUGCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 98955 0.74 0.460141
Target:  5'- gGGGCUCgugcUGGGCGccguCGG-CGGCGCCg -3'
miRNA:   3'- -CCCGAGa---GCCUGCuu--GCCgGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 191985 0.74 0.468928
Target:  5'- cGGCUcCUCcgacggccgGGACGGuaGCGGCgGugGCCg -3'
miRNA:   3'- cCCGA-GAG---------CCUGCU--UGCCGgCugCGG- -5'
10917 5' -59.1 NC_002794.1 + 68918 0.73 0.484059
Target:  5'- gGGGCUCgCGGcguccucgucgcccGCGGGCcgcggcGCCGGCGCCu -3'
miRNA:   3'- -CCCGAGaGCC--------------UGCUUGc-----CGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 129189 0.73 0.486754
Target:  5'- cGGcCUC-CGGGucgacgacCGAGCGGCCGACGgCg -3'
miRNA:   3'- cCC-GAGaGCCU--------GCUUGCCGGCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 125746 0.73 0.495787
Target:  5'- cGGGCcgCg-GGACG-GCGGCCGGCGgCu -3'
miRNA:   3'- -CCCGa-GagCCUGCuUGCCGGCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 153046 0.73 0.503981
Target:  5'- cGGGUccCUCGGGCGGACGGUccccgagCGACGgUCg -3'
miRNA:   3'- -CCCGa-GAGCCUGCUUGCCG-------GCUGC-GG- -5'
10917 5' -59.1 NC_002794.1 + 53612 0.73 0.504894
Target:  5'- cGGGCcgccgcagcgUCggaCGGACGAGguCGGCCGA-GCCg -3'
miRNA:   3'- -CCCG----------AGa--GCCUGCUU--GCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 96896 0.73 0.514073
Target:  5'- gGGGCaggCgUCGGGCGGAggUGGCggaGGCGCCg -3'
miRNA:   3'- -CCCGa--G-AGCCUGCUU--GCCGg--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 85047 0.73 0.514073
Target:  5'- cGGGCccgcgCUC-GACGAcCGGCC-ACGCCg -3'
miRNA:   3'- -CCCGa----GAGcCUGCUuGCCGGcUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 179661 0.73 0.514073
Target:  5'- cGGGCUCgcCGGACGGcacccGCGGCggCGACGgUg -3'
miRNA:   3'- -CCCGAGa-GCCUGCU-----UGCCG--GCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 137323 0.73 0.514073
Target:  5'- cGGUUCcgCGGaagguuccGCGGACGGCuCGGCGUCg -3'
miRNA:   3'- cCCGAGa-GCC--------UGCUUGCCG-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 114730 0.73 0.52332
Target:  5'- cGGCUC-CGGGuuCGu-CGaGCCGGCGCCg -3'
miRNA:   3'- cCCGAGaGCCU--GCuuGC-CGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 37874 0.73 0.52332
Target:  5'- cGGCgUCUCGGGCGGcgGgGGCgGugGCg -3'
miRNA:   3'- cCCG-AGAGCCUGCU--UgCCGgCugCGg -5'
10917 5' -59.1 NC_002794.1 + 23962 0.72 0.532629
Target:  5'- uGGCUCcgagccagCGG-CGA--GGCCGGCGCCa -3'
miRNA:   3'- cCCGAGa-------GCCuGCUugCCGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.