miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 12145 0.72 0.541998
Target:  5'- cGGCUaCU---ACGAGCGGCCGAuCGCCc -3'
miRNA:   3'- cCCGA-GAgccUGCUUGCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 133894 0.72 0.541998
Target:  5'- cGGGCUgcgucgucuggaUUCGGucuACGAgacgGCGGCCG-CGCCc -3'
miRNA:   3'- -CCCGA------------GAGCC---UGCU----UGCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 33223 0.72 0.541998
Target:  5'- cGGCaggUCUCGGACGAGUGGaacgCGcACGCCa -3'
miRNA:   3'- cCCG---AGAGCCUGCUUGCCg---GC-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 94298 0.72 0.55142
Target:  5'- gGGGCggCUCGGGCGc---GCCGAUGCa -3'
miRNA:   3'- -CCCGa-GAGCCUGCuugcCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 129239 0.72 0.55142
Target:  5'- cGGGCggCUCcGGCGGACucgGGUCGAgCGCCu -3'
miRNA:   3'- -CCCGa-GAGcCUGCUUG---CCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 58914 0.72 0.560892
Target:  5'- cGGGaUCUCGGACGugcCGcGCCuGcACGCCa -3'
miRNA:   3'- -CCCgAGAGCCUGCuu-GC-CGG-C-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 107511 0.72 0.560892
Target:  5'- gGGGUgC-CGGuCGAcgccgACGGCCGGCGCg -3'
miRNA:   3'- -CCCGaGaGCCuGCU-----UGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 119891 0.72 0.560892
Target:  5'- aGGaaCUggCGGAUcuuGGCGGCCGACGCCg -3'
miRNA:   3'- cCCgaGA--GCCUGc--UUGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 180721 0.72 0.560892
Target:  5'- cGGGUUCa-GaGACGcGCGGaCGACGCCg -3'
miRNA:   3'- -CCCGAGagC-CUGCuUGCCgGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 130324 0.72 0.560892
Target:  5'- uGGC-CgagacggCGGACGAagGCGGCgacgaCGACGCCg -3'
miRNA:   3'- cCCGaGa------GCCUGCU--UGCCG-----GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 187485 0.72 0.570407
Target:  5'- cGGGCcga-GGACGAggccgcgcagGCGGCCagGGCGCCc -3'
miRNA:   3'- -CCCGagagCCUGCU----------UGCCGG--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 104421 0.72 0.570407
Target:  5'- cGGC-CUCGGcCGc-CGGCCcgGACGCCg -3'
miRNA:   3'- cCCGaGAGCCuGCuuGCCGG--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 102652 0.72 0.570407
Target:  5'- cGGCgcgCUCGGAgGAGCuGCCGAgCGUg -3'
miRNA:   3'- cCCGa--GAGCCUgCUUGcCGGCU-GCGg -5'
10917 5' -59.1 NC_002794.1 + 181716 0.72 0.579962
Target:  5'- cGGGUaaucgcccgUCUCGcGgaacacgcGCGAGCGGCCGGCcaGCCc -3'
miRNA:   3'- -CCCG---------AGAGC-C--------UGCUUGCCGGCUG--CGG- -5'
10917 5' -59.1 NC_002794.1 + 143820 0.72 0.579962
Target:  5'- cGGUUCccauGGCGAGCGGCCgguccGACGCCu -3'
miRNA:   3'- cCCGAGagc-CUGCUUGCCGG-----CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 53860 0.72 0.579962
Target:  5'- gGGGUUCUCGacGACGGucuCGGCgGACuCCu -3'
miRNA:   3'- -CCCGAGAGC--CUGCUu--GCCGgCUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 122476 0.71 0.58955
Target:  5'- -cGCUCgcccaggcCGGGCuGAACGaGUCGGCGCCg -3'
miRNA:   3'- ccCGAGa-------GCCUG-CUUGC-CGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 99944 0.71 0.58955
Target:  5'- cGGCUgUUCGGcCGGACcGCCGACGgCg -3'
miRNA:   3'- cCCGA-GAGCCuGCUUGcCGGCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 13790 0.71 0.599165
Target:  5'- uGGCUCcggccgucuUCGcGACGGGCccGGCCGGCGgCg -3'
miRNA:   3'- cCCGAG---------AGC-CUGCUUG--CCGGCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 14999 0.71 0.599165
Target:  5'- -aGCUcCUCGGGCGGucuCGGCUGGCuGCUc -3'
miRNA:   3'- ccCGA-GAGCCUGCUu--GCCGGCUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.