miRNA display CGI


Results 81 - 100 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 139109 0.71 0.599165
Target:  5'- uGGGCaCgacgCGGGCGAucACGGagaCGGCGUCg -3'
miRNA:   3'- -CCCGaGa---GCCUGCU--UGCCg--GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 189560 0.71 0.599165
Target:  5'- uGGCggucccgCUCGGuCGGccgGCccgGGCCGGCGCCc -3'
miRNA:   3'- cCCGa------GAGCCuGCU---UG---CCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 13790 0.71 0.599165
Target:  5'- uGGCUCcggccgucuUCGcGACGGGCccGGCCGGCGgCg -3'
miRNA:   3'- cCCGAG---------AGC-CUGCUUG--CCGGCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 14999 0.71 0.599165
Target:  5'- -aGCUcCUCGGGCGGucuCGGCUGGCuGCUc -3'
miRNA:   3'- ccCGA-GAGCCUGCUu--GCCGGCUG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 34756 0.71 0.607838
Target:  5'- cGGCg--CGGugGGacgcggcACGGCCGcccGCGCCa -3'
miRNA:   3'- cCCGagaGCCugCU-------UGCCGGC---UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 116078 0.71 0.608802
Target:  5'- cGGaGCgCUCGGcGCG-GCGGUCGuCGCCg -3'
miRNA:   3'- -CC-CGaGAGCC-UGCuUGCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 189844 0.71 0.608802
Target:  5'- cGGGgUCUCGGccGCgGAGCcGUCGGCGUCg -3'
miRNA:   3'- -CCCgAGAGCC--UG-CUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 145329 0.71 0.618455
Target:  5'- cGGGCggcgCUCGGGCccGAGCGGgcCCGA-GCUg -3'
miRNA:   3'- -CCCGa---GAGCCUG--CUUGCC--GGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 121382 0.71 0.618455
Target:  5'- cGGCcgccgC-CGGGaccGCGGCCGGCGCCg -3'
miRNA:   3'- cCCGa----GaGCCUgcuUGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 141402 0.71 0.618455
Target:  5'- gGGGCUCggCGacGACGAugaccucggggGCGGCgggGGCGCCg -3'
miRNA:   3'- -CCCGAGa-GC--CUGCU-----------UGCCGg--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 192408 0.71 0.628117
Target:  5'- gGGGUagUCGaaacgccgcGACGGguccGCGGCCGGCGCg -3'
miRNA:   3'- -CCCGagAGC---------CUGCU----UGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 105549 0.71 0.628117
Target:  5'- cGGCggCUCGGGCGAACGGauaGgguGCGCg -3'
miRNA:   3'- cCCGa-GAGCCUGCUUGCCgg-C---UGCGg -5'
10917 5' -59.1 NC_002794.1 + 60619 0.71 0.628117
Target:  5'- -aGCagaacCGGACGGGCGGacCCGGCGCCg -3'
miRNA:   3'- ccCGaga--GCCUGCUUGCC--GGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 16755 0.71 0.635849
Target:  5'- cGGCcccaccgaaaaUCGGcACGAACGgcacgcGCCGACGCCa -3'
miRNA:   3'- cCCGag---------AGCC-UGCUUGC------CGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 128820 0.71 0.636815
Target:  5'- uGGCggCUCGGACucugucugauccuGAGC-GCCGGCGUCg -3'
miRNA:   3'- cCCGa-GAGCCUG-------------CUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 113484 0.71 0.637782
Target:  5'- aGGCUCUgcaGGagcucGCGcGCGGCCGAgaGCCg -3'
miRNA:   3'- cCCGAGAg--CC-----UGCuUGCCGGCUg-CGG- -5'
10917 5' -59.1 NC_002794.1 + 44404 0.71 0.637782
Target:  5'- -cGUUC-CGGucUGAcCGGCCGGCGCCg -3'
miRNA:   3'- ccCGAGaGCCu-GCUuGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 100343 0.71 0.641647
Target:  5'- cGGCUCUCgaccgccgagcuggaGGugGAcuGCgagguGGCCGACGUCc -3'
miRNA:   3'- cCCGAGAG---------------CCugCU--UG-----CCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 30373 0.7 0.647442
Target:  5'- uGGCUCUUGG-CGAucgucAUGGCCgcccgcgacguGAUGCCg -3'
miRNA:   3'- cCCGAGAGCCuGCU-----UGCCGG-----------CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 43901 0.7 0.647442
Target:  5'- cGGCgUCUCGuGAgGAGCGGCgCGGucaGCCc -3'
miRNA:   3'- cCCG-AGAGC-CUgCUUGCCG-GCUg--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.