miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 14640 0.66 0.873079
Target:  5'- cGGGCa--CGGA--GAC-GCCGGCGCCg -3'
miRNA:   3'- -CCCGagaGCCUgcUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 100297 0.66 0.872389
Target:  5'- cGGCUggugccgcCUCcgccgcuGGcACGcGCGGCCGGCGCa -3'
miRNA:   3'- cCCGA--------GAG-------CC-UGCuUGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 101033 0.66 0.871005
Target:  5'- cGGGC---CGGGCGcggguCGGCCgcuacugcgugcagGACGCCg -3'
miRNA:   3'- -CCCGagaGCCUGCuu---GCCGG--------------CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 48617 0.66 0.866807
Target:  5'- cGGC-CUCaGACgcgGAGCGGCCGucggggcccgcgagcCGCCg -3'
miRNA:   3'- cCCGaGAGcCUG---CUUGCCGGCu--------------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 58744 0.66 0.8661
Target:  5'- cGGGCUCaaCGGGC-AGCuGGCgGAggaGCCg -3'
miRNA:   3'- -CCCGAGa-GCCUGcUUG-CCGgCUg--CGG- -5'
10917 5' -59.1 NC_002794.1 + 12862 0.66 0.8661
Target:  5'- gGGGaccacCUgGGACccGCaGCCGAUGCCg -3'
miRNA:   3'- -CCCga---GAgCCUGcuUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 14516 0.66 0.8661
Target:  5'- cGGCgCUCGuGGCGccgcuCGGCCacGGCGCUc -3'
miRNA:   3'- cCCGaGAGC-CUGCuu---GCCGG--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 115042 0.66 0.8661
Target:  5'- aGGuGCgacCGGGCGGcggGCGGCa-GCGCCg -3'
miRNA:   3'- -CC-CGagaGCCUGCU---UGCCGgcUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 78424 0.66 0.8661
Target:  5'- -cGCUCcCGGcgucACGGucGCGGCgGACGCg -3'
miRNA:   3'- ccCGAGaGCC----UGCU--UGCCGgCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 86185 0.66 0.8661
Target:  5'- cGGGC-CgagccgGGACGGAUgcuccgGGCCG-CGCCc -3'
miRNA:   3'- -CCCGaGag----CCUGCUUG------CCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 86377 0.66 0.8661
Target:  5'- cGGGC-CgagccgGGACGGAUgcuccgGGCCG-CGCCc -3'
miRNA:   3'- -CCCGaGag----CCUGCUUG------CCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 152820 0.66 0.8661
Target:  5'- gGGGUgccgugCGGAC--ACGGCgucagCGACGCCu -3'
miRNA:   3'- -CCCGaga---GCCUGcuUGCCG-----GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 86545 0.66 0.8661
Target:  5'- cGGGC-CgagccgGGACGGAUgcuccgGGCCG-CGCCc -3'
miRNA:   3'- -CCCGaGag----CCUGCUUG------CCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 186878 0.66 0.8661
Target:  5'- cGGGCUC---GGCucGCGGuCCGGCGUCc -3'
miRNA:   3'- -CCCGAGagcCUGcuUGCC-GGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 87356 0.66 0.8661
Target:  5'- cGGGUcCggCGG-CGAGCGGCguucugggCGGCGCg -3'
miRNA:   3'- -CCCGaGa-GCCuGCUUGCCG--------GCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 150076 0.66 0.865392
Target:  5'- -cGCUCUggccuuccugcgcUGGGCGGAgcgugaGGCCGgaGCGCCg -3'
miRNA:   3'- ccCGAGA-------------GCCUGCUUg-----CCGGC--UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 86941 0.66 0.858934
Target:  5'- gGGGCgggaUCcGGCGAGC-GUCGACGUCc -3'
miRNA:   3'- -CCCGag--AGcCUGCUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 98987 0.66 0.858934
Target:  5'- uGGC-CUCGGugGucgGCGGCUu-CGUCa -3'
miRNA:   3'- cCCGaGAGCCugCu--UGCCGGcuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 190716 0.66 0.858934
Target:  5'- cGGGUUCUCcagccggaGACGcAGCGcCCGcCGCCg -3'
miRNA:   3'- -CCCGAGAGc-------CUGC-UUGCcGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 74375 0.66 0.858934
Target:  5'- -uGCU-UCGG--GGGCGGCCGGCGCg -3'
miRNA:   3'- ccCGAgAGCCugCUUGCCGGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.