miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 86941 0.66 0.858934
Target:  5'- gGGGCgggaUCcGGCGAGC-GUCGACGUCc -3'
miRNA:   3'- -CCCGag--AGcCUGCUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 98987 0.66 0.858934
Target:  5'- uGGC-CUCGGugGucgGCGGCUu-CGUCa -3'
miRNA:   3'- cCCGaGAGCCugCu--UGCCGGcuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 190716 0.66 0.858934
Target:  5'- cGGGUUCUCcagccggaGACGcAGCGcCCGcCGCCg -3'
miRNA:   3'- -CCCGAGAGc-------CUGC-UUGCcGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 193747 0.66 0.858934
Target:  5'- cGGCU-UCGG-CGAGCGaccGCCGGCcCCg -3'
miRNA:   3'- cCCGAgAGCCuGCUUGC---CGGCUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 131551 0.67 0.851585
Target:  5'- cGGC-CUCGcccGugGu-CGGCgCGGCGCCc -3'
miRNA:   3'- cCCGaGAGC---CugCuuGCCG-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 130252 0.67 0.851585
Target:  5'- aGGUUCUgCGGGaacagcucgaaGAGCGGuuGAgcCGCCg -3'
miRNA:   3'- cCCGAGA-GCCUg----------CUUGCCggCU--GCGG- -5'
10917 5' -59.1 NC_002794.1 + 133491 0.67 0.851585
Target:  5'- uGGCUUUCGcGGCGAccCGuCCGACGgCg -3'
miRNA:   3'- cCCGAGAGC-CUGCUu-GCcGGCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 138845 0.67 0.851585
Target:  5'- cGGGCUCUCuggaaucgcgGGACucuCGGCCu-CGCg -3'
miRNA:   3'- -CCCGAGAG----------CCUGcuuGCCGGcuGCGg -5'
10917 5' -59.1 NC_002794.1 + 91248 0.67 0.851585
Target:  5'- cGGGCUgCgcucgCGGACGccguucgUGGaCCGGCGCg -3'
miRNA:   3'- -CCCGA-Ga----GCCUGCuu-----GCC-GGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 123770 0.67 0.85084
Target:  5'- cGGGCg--UGGACGccuccguguuggaGGCGG-UGGCGCCg -3'
miRNA:   3'- -CCCGagaGCCUGC-------------UUGCCgGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 85284 0.67 0.84709
Target:  5'- cGGCUC-CGGuC-AGCGGCUGAgacgaggcgacgaccCGCCg -3'
miRNA:   3'- cCCGAGaGCCuGcUUGCCGGCU---------------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 128116 0.67 0.846335
Target:  5'- gGGGCUCggCGGauacccucaucguGCGAggaagaagcgacgcgACGGCgGcucGCGCCg -3'
miRNA:   3'- -CCCGAGa-GCC-------------UGCU---------------UGCCGgC---UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 22251 0.67 0.844058
Target:  5'- aGGCacgCgaaCGGGCGGACGuGCagaGACGCa -3'
miRNA:   3'- cCCGa--Ga--GCCUGCUUGC-CGg--CUGCGg -5'
10917 5' -59.1 NC_002794.1 + 115917 0.67 0.844058
Target:  5'- gGGGUggaCUUGGcGCGGcgGCgGGCCGGCccGCCg -3'
miRNA:   3'- -CCCGa--GAGCC-UGCU--UG-CCGGCUG--CGG- -5'
10917 5' -59.1 NC_002794.1 + 83892 0.67 0.844058
Target:  5'- cGGGCUCggCGcccGACGAGCccGGCacccuCGCCg -3'
miRNA:   3'- -CCCGAGa-GC---CUGCUUG--CCGgcu--GCGG- -5'
10917 5' -59.1 NC_002794.1 + 66654 0.67 0.844058
Target:  5'- gGGGCa-UCGGuaACGGcgucguggucaACGGCCccGGCGCCc -3'
miRNA:   3'- -CCCGagAGCC--UGCU-----------UGCCGG--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 141446 0.67 0.844058
Target:  5'- gGGGCgC-CGG--GAGCGGCgCGGCGUCc -3'
miRNA:   3'- -CCCGaGaGCCugCUUGCCG-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 124382 0.67 0.844058
Target:  5'- -cGC-CUCGGuCGcGGCGGCgCGuCGCCg -3'
miRNA:   3'- ccCGaGAGCCuGC-UUGCCG-GCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 105467 0.67 0.844058
Target:  5'- -cGUUCUgGGACG-ACGaGCCGuCGUCu -3'
miRNA:   3'- ccCGAGAgCCUGCuUGC-CGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 110266 0.67 0.844058
Target:  5'- cGGCg-UCGcGACG-GCGGCCGcCGUCc -3'
miRNA:   3'- cCCGagAGC-CUGCuUGCCGGCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.