miRNA display CGI


Results 21 - 40 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 22251 0.67 0.844058
Target:  5'- aGGCacgCgaaCGGGCGGACGuGCagaGACGCa -3'
miRNA:   3'- cCCGa--Ga--GCCUGCUUGC-CGg--CUGCGg -5'
10917 5' -59.1 NC_002794.1 + 22626 0.66 0.873079
Target:  5'- cGGGCcgCUCGaGGCGcuCGGaCCGcugaucgugauGCGCUa -3'
miRNA:   3'- -CCCGa-GAGC-CUGCuuGCC-GGC-----------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 22858 0.66 0.886454
Target:  5'- aGGaUCcCGGACGuccCGGCCGuCGCg -3'
miRNA:   3'- cCCgAGaGCCUGCuu-GCCGGCuGCGg -5'
10917 5' -59.1 NC_002794.1 + 22935 0.68 0.760435
Target:  5'- cGGCacccaUCGGcugGCcGACgGGCCGGCGCCg -3'
miRNA:   3'- cCCGag---AGCC---UGcUUG-CCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 23622 0.69 0.723733
Target:  5'- cGGGCgCcCGGACGcGCGGCCcucGACcCCc -3'
miRNA:   3'- -CCCGaGaGCCUGCuUGCCGG---CUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 23962 0.72 0.532629
Target:  5'- uGGCUCcgagccagCGG-CGA--GGCCGGCGCCa -3'
miRNA:   3'- cCCGAGa-------GCCuGCUugCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 30373 0.7 0.647442
Target:  5'- uGGCUCUUGG-CGAucgucAUGGCCgcccgcgacguGAUGCCg -3'
miRNA:   3'- cCCGAGAGCCuGCU-----UGCCGG-----------CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 31987 0.66 0.858934
Target:  5'- -cGC-CUCGGucugcgUGGGCGaGCCGACGCa -3'
miRNA:   3'- ccCGaGAGCCu-----GCUUGC-CGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 32261 0.69 0.714363
Target:  5'- uGGcGCUCgacggcCGGcCGAuCGGCgagCGACGCCg -3'
miRNA:   3'- -CC-CGAGa-----GCCuGCUuGCCG---GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 32842 0.77 0.305457
Target:  5'- cGGCUCaUCGGuaGCGGcaGCGGCCGA-GCCg -3'
miRNA:   3'- cCCGAG-AGCC--UGCU--UGCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 33223 0.72 0.541998
Target:  5'- cGGCaggUCUCGGACGAGUGGaacgCGcACGCCa -3'
miRNA:   3'- cCCG---AGAGCCUGCUUGCCg---GC-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 33432 0.68 0.769377
Target:  5'- cGGGCuggUCcCGGugcaggaccuCGGGCGGCCGccggacGCGCCc -3'
miRNA:   3'- -CCCG---AGaGCCu---------GCUUGCCGGC------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 33887 0.69 0.714363
Target:  5'- uGGaGCUCauggagCGGcACGAcaagACGaCCGACGCCa -3'
miRNA:   3'- -CC-CGAGa-----GCC-UGCU----UGCcGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 34363 0.75 0.393223
Target:  5'- -cGCUCUaccUGGACGAcaacACGGCgGugGCCa -3'
miRNA:   3'- ccCGAGA---GCCUGCU----UGCCGgCugCGG- -5'
10917 5' -59.1 NC_002794.1 + 34756 0.71 0.607838
Target:  5'- cGGCg--CGGugGGacgcggcACGGCCGcccGCGCCa -3'
miRNA:   3'- cCCGagaGCCugCU-------UGCCGGC---UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 34849 0.74 0.451442
Target:  5'- cGGGCg-UCGGAgCGGGCGccGCgGGCGCCg -3'
miRNA:   3'- -CCCGagAGCCU-GCUUGC--CGgCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 35384 0.69 0.714363
Target:  5'- gGGGCUCUCGGACu-ACGucacccGCCuccGCGUCu -3'
miRNA:   3'- -CCCGAGAGCCUGcuUGC------CGGc--UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 36009 0.69 0.723733
Target:  5'- gGGGCUCgggCGG-CGGAauccgccgucCGGCCcGGcCGCCc -3'
miRNA:   3'- -CCCGAGa--GCCuGCUU----------GCCGG-CU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 37255 0.68 0.778209
Target:  5'- -cGCUCUCGcucuccgucGGCGGGCGcGCgGGCGCg -3'
miRNA:   3'- ccCGAGAGC---------CUGCUUGC-CGgCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 37357 0.66 0.873766
Target:  5'- cGGGCcccagguagucgaagCUCGGGCGca-GGCCGucgaaguCGCUg -3'
miRNA:   3'- -CCCGa--------------GAGCCUGCuugCCGGCu------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.