miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 37762 0.67 0.820474
Target:  5'- cGGCgC-CGGcGgGAGCGGCCGuCGUCg -3'
miRNA:   3'- cCCGaGaGCC-UgCUUGCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 37874 0.73 0.52332
Target:  5'- cGGCgUCUCGGGCGGcgGgGGCgGugGCg -3'
miRNA:   3'- cCCG-AGAGCCUGCU--UgCCGgCugCGg -5'
10917 5' -59.1 NC_002794.1 + 38439 0.67 0.836361
Target:  5'- cGGCgggC-CGGACuGAggagccggcGCGGCCGcggcGCGCCc -3'
miRNA:   3'- cCCGa--GaGCCUG-CU---------UGCCGGC----UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 40477 0.8 0.203203
Target:  5'- cGGGCggCUCau-CGAACGGCCGGCGCUc -3'
miRNA:   3'- -CCCGa-GAGccuGCUUGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 42615 0.7 0.680166
Target:  5'- cGGGCUCUCucgacGACcgcgcucucacagcgGAgucGCGGCCGAaGCCg -3'
miRNA:   3'- -CCCGAGAGc----CUG---------------CU---UGCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 43669 0.76 0.332951
Target:  5'- cGGGCUCUCGGGCccGGgcGCGGaCC-AUGCCg -3'
miRNA:   3'- -CCCGAGAGCCUG--CU--UGCC-GGcUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 43901 0.7 0.647442
Target:  5'- cGGCgUCUCGuGAgGAGCGGCgCGGucaGCCc -3'
miRNA:   3'- cCCG-AGAGC-CUgCUUGCCG-GCUg--CGG- -5'
10917 5' -59.1 NC_002794.1 + 44182 0.76 0.362217
Target:  5'- cGGCUCgucgacucCGGGCGAAgccgGGCCGACGUCc -3'
miRNA:   3'- cCCGAGa-------GCCUGCUUg---CCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 44244 0.8 0.217908
Target:  5'- cGGGCggCUCGGugcCGGGCGGCuCGGcCGCCg -3'
miRNA:   3'- -CCCGa-GAGCCu--GCUUGCCG-GCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 44404 0.71 0.637782
Target:  5'- -cGUUC-CGGucUGAcCGGCCGGCGCCg -3'
miRNA:   3'- ccCGAGaGCCu-GCUuGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 44709 0.74 0.451442
Target:  5'- cGGCcgCgacCGcGGCGAcguCGGCCGGCGCCg -3'
miRNA:   3'- cCCGa-Ga--GC-CUGCUu--GCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 47350 0.68 0.803977
Target:  5'- cGGcCUC-CGGACGuucGCGcucaaGCCGAgGCCg -3'
miRNA:   3'- cCC-GAGaGCCUGCu--UGC-----CGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 48139 0.66 0.879865
Target:  5'- aGGGCUCgaagCccucGACGA--GGCagCGGCGCCg -3'
miRNA:   3'- -CCCGAGa---Gc---CUGCUugCCG--GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 48580 0.78 0.292377
Target:  5'- uGGGCgagC-CGGAgGAGCGGCgCGuCGCCg -3'
miRNA:   3'- -CCCGa--GaGCCUgCUUGCCG-GCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 48617 0.66 0.866807
Target:  5'- cGGC-CUCaGACgcgGAGCGGCCGucggggcccgcgagcCGCCg -3'
miRNA:   3'- cCCGaGAGcCUG---CUUGCCGGCu--------------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 49250 0.69 0.723733
Target:  5'- cGGGCgcccgCgcacccacgaCGGGCGcuccAACGGCCcgGGCGCCg -3'
miRNA:   3'- -CCCGa----Ga---------GCCUGC----UUGCCGG--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 49600 0.66 0.879865
Target:  5'- -cGCgaUCGG-CG-ACGGCgGGCGCCg -3'
miRNA:   3'- ccCGagAGCCuGCuUGCCGgCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 50579 0.76 0.347364
Target:  5'- cGGCgugCgcggCGGcUGggUGGCCGGCGCCg -3'
miRNA:   3'- cCCGa--Ga---GCCuGCuuGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 50767 0.68 0.764024
Target:  5'- cGGGCggcggcgacggcgcgUCUCGGGCGGcgccuccuCGcCCGGCGUCg -3'
miRNA:   3'- -CCCG---------------AGAGCCUGCUu-------GCcGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 51155 0.66 0.886454
Target:  5'- -cGCUCgaCGGAcacacccccuCGAcGCGGCCGuuCGCCg -3'
miRNA:   3'- ccCGAGa-GCCU----------GCU-UGCCGGCu-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.