miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 51206 0.67 0.836361
Target:  5'- -cGCUCgcccgCGGA---GCGGCCGGCcgGCCg -3'
miRNA:   3'- ccCGAGa----GCCUgcuUGCCGGCUG--CGG- -5'
10917 5' -59.1 NC_002794.1 + 53299 0.7 0.695441
Target:  5'- aGGUgC-CGaGCGGuCGGCCGGCGCCg -3'
miRNA:   3'- cCCGaGaGCcUGCUuGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 53612 0.73 0.504894
Target:  5'- cGGGCcgccgcagcgUCggaCGGACGAGguCGGCCGA-GCCg -3'
miRNA:   3'- -CCCG----------AGa--GCCUGCUU--GCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 53860 0.72 0.579962
Target:  5'- gGGGUUCUCGacGACGGucuCGGCgGACuCCu -3'
miRNA:   3'- -CCCGAGAGC--CUGCUu--GCCGgCUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 54227 0.74 0.425901
Target:  5'- -cGCcgUCUCGGAUGaAGCGGCCGAgCGCg -3'
miRNA:   3'- ccCG--AGAGCCUGC-UUGCCGGCU-GCGg -5'
10917 5' -59.1 NC_002794.1 + 55179 0.69 0.742256
Target:  5'- cGGGCgaCUCGaGGCG-GCGGCCcuaacaccGGCGCg -3'
miRNA:   3'- -CCCGa-GAGC-CUGCuUGCCGG--------CUGCGg -5'
10917 5' -59.1 NC_002794.1 + 55297 0.69 0.751392
Target:  5'- aGGGCgg-CGGcgGCGucGCGGCgGGCGCg -3'
miRNA:   3'- -CCCGagaGCC--UGCu-UGCCGgCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 55343 0.68 0.795517
Target:  5'- cGGGgUCgcgcccgaggCGGcCGAgGCGGCCGAgGCg -3'
miRNA:   3'- -CCCgAGa---------GCCuGCU-UGCCGGCUgCGg -5'
10917 5' -59.1 NC_002794.1 + 55378 0.67 0.828497
Target:  5'- cGGC-CgaggCGGcCGAgGCGGCCGAgGCg -3'
miRNA:   3'- cCCGaGa---GCCuGCU-UGCCGGCUgCGg -5'
10917 5' -59.1 NC_002794.1 + 56309 0.7 0.647442
Target:  5'- cGGUcg-CGGuCGcuGGCGGCCGugGCCg -3'
miRNA:   3'- cCCGagaGCCuGC--UUGCCGGCugCGG- -5'
10917 5' -59.1 NC_002794.1 + 57401 0.69 0.742256
Target:  5'- cGGCUC-CGGcgccCGcgUGGCCGGCGUg -3'
miRNA:   3'- cCCGAGaGCCu---GCuuGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 57975 0.66 0.886454
Target:  5'- -uGCUCUacGACG-GCGaGCCGACGCg -3'
miRNA:   3'- ccCGAGAgcCUGCuUGC-CGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 58072 0.78 0.279738
Target:  5'- cGGCggcgGGACGGGCGGcCCGGCGCCc -3'
miRNA:   3'- cCCGagagCCUGCUUGCC-GGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 58338 0.67 0.827702
Target:  5'- -uGCUCgUCGGGaaccugcCGcuCGGCCuGGCGCCg -3'
miRNA:   3'- ccCGAG-AGCCU-------GCuuGCCGG-CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 58744 0.66 0.8661
Target:  5'- cGGGCUCaaCGGGC-AGCuGGCgGAggaGCCg -3'
miRNA:   3'- -CCCGAGa-GCCUGcUUG-CCGgCUg--CGG- -5'
10917 5' -59.1 NC_002794.1 + 58914 0.72 0.560892
Target:  5'- cGGGaUCUCGGACGugcCGcGCCuGcACGCCa -3'
miRNA:   3'- -CCCgAGAGCCUGCuu-GC-CGG-C-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 58961 0.66 0.873079
Target:  5'- -cGCUCUUcGugGA--GGCCGAgCGCCu -3'
miRNA:   3'- ccCGAGAGcCugCUugCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 59454 0.66 0.873079
Target:  5'- cGGGCUCUCcGACGAcau-CCGcCGCUa -3'
miRNA:   3'- -CCCGAGAGcCUGCUugccGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 60619 0.71 0.628117
Target:  5'- -aGCagaacCGGACGGGCGGacCCGGCGCCg -3'
miRNA:   3'- ccCGaga--GCCUGCUUGCC--GGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 61812 0.69 0.751392
Target:  5'- -cGCUCaucuccggCGGcCGccGGCGGCCGGCGUCa -3'
miRNA:   3'- ccCGAGa-------GCCuGC--UUGCCGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.