miRNA display CGI


Results 1 - 20 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 194341 0.67 0.828497
Target:  5'- cGGGCUCUCcGACGGGgGcGCCaGGaacCGCUc -3'
miRNA:   3'- -CCCGAGAGcCUGCUUgC-CGG-CU---GCGG- -5'
10917 5' -59.1 NC_002794.1 + 193747 0.66 0.858934
Target:  5'- cGGCU-UCGG-CGAGCGaccGCCGGCcCCg -3'
miRNA:   3'- cCCGAgAGCCuGCUUGC---CGGCUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 192813 0.66 0.886454
Target:  5'- -uGCUCcacGugGAACaGGCCGGuCGCCa -3'
miRNA:   3'- ccCGAGagcCugCUUG-CCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 192621 0.69 0.751392
Target:  5'- aGGUg--CGGAcaguCGGGCGGCCGcuccagccGCGCCg -3'
miRNA:   3'- cCCGagaGCCU----GCUUGCCGGC--------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 192408 0.71 0.628117
Target:  5'- gGGGUagUCGaaacgccgcGACGGguccGCGGCCGGCGCg -3'
miRNA:   3'- -CCCGagAGC---------CUGCU----UGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 191985 0.74 0.468928
Target:  5'- cGGCUcCUCcgacggccgGGACGGuaGCGGCgGugGCCg -3'
miRNA:   3'- cCCGA-GAG---------CCUGCU--UGCCGgCugCGG- -5'
10917 5' -59.1 NC_002794.1 + 190716 0.66 0.858934
Target:  5'- cGGGUUCUCcagccggaGACGcAGCGcCCGcCGCCg -3'
miRNA:   3'- -CCCGAGAGc-------CUGC-UUGCcGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 190166 0.67 0.812298
Target:  5'- cGGCUCUCcu-CGAACacccGCCG-CGCCa -3'
miRNA:   3'- cCCGAGAGccuGCUUGc---CGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 189844 0.71 0.608802
Target:  5'- cGGGgUCUCGGccGCgGAGCcGUCGGCGUCg -3'
miRNA:   3'- -CCCgAGAGCC--UG-CUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 189560 0.71 0.599165
Target:  5'- uGGCggucccgCUCGGuCGGccgGCccgGGCCGGCGCCc -3'
miRNA:   3'- cCCGa------GAGCCuGCU---UG---CCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 187678 0.7 0.657092
Target:  5'- cGGGCgaugCGGGuCGAGCGGCCcGuugGCCg -3'
miRNA:   3'- -CCCGaga-GCCU-GCUUGCCGG-Cug-CGG- -5'
10917 5' -59.1 NC_002794.1 + 187485 0.72 0.570407
Target:  5'- cGGGCcga-GGACGAggccgcgcagGCGGCCagGGCGCCc -3'
miRNA:   3'- -CCCGagagCCUGCU----------UGCCGG--CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 186878 0.66 0.8661
Target:  5'- cGGGCUC---GGCucGCGGuCCGGCGUCc -3'
miRNA:   3'- -CCCGAGagcCUGcuUGCC-GGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 186280 0.68 0.786925
Target:  5'- uGGCgcggCGGcaccGCGGccagGCGGCCGGuCGCCg -3'
miRNA:   3'- cCCGaga-GCC----UGCU----UGCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 185347 0.68 0.786925
Target:  5'- -cGCUCgcgCGccgccGCGAGCgGGCCGaACGCCg -3'
miRNA:   3'- ccCGAGa--GCc----UGCUUG-CCGGC-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 185212 0.7 0.685906
Target:  5'- cGGCUCgcgccgCGGA-GAGuCGcGCCGACcGCCg -3'
miRNA:   3'- cCCGAGa-----GCCUgCUU-GC-CGGCUG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 185180 0.68 0.786925
Target:  5'- cGGCg--CGGuCGGcGCGGUCGGCGCg -3'
miRNA:   3'- cCCGagaGCCuGCU-UGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 184716 0.67 0.812298
Target:  5'- cGGCUCUucCGaGCGAcaGGCCaACGCCa -3'
miRNA:   3'- cCCGAGA--GCcUGCUugCCGGcUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 184514 0.7 0.695441
Target:  5'- cGGGCcCcgCGcGCGGcGCGGgCGACGCCg -3'
miRNA:   3'- -CCCGaGa-GCcUGCU-UGCCgGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 184490 0.7 0.647442
Target:  5'- gGGGCcC-CGGACGccCGGgCGGCGCg -3'
miRNA:   3'- -CCCGaGaGCCUGCuuGCCgGCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.