miRNA display CGI


Results 21 - 40 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 184058 0.66 0.873079
Target:  5'- cGGGC-CgCGG-CGaAGCGGCaCG-CGCCc -3'
miRNA:   3'- -CCCGaGaGCCuGC-UUGCCG-GCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 183580 0.76 0.339382
Target:  5'- cGGGC-CUUuaauacgguggGGGCGGaggggggccgcgcGCGGCCGGCGCCc -3'
miRNA:   3'- -CCCGaGAG-----------CCUGCU-------------UGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 183147 0.7 0.685906
Target:  5'- -aGCUCcgCGGACacGCGGCCGGgcUGCCc -3'
miRNA:   3'- ccCGAGa-GCCUGcuUGCCGGCU--GCGG- -5'
10917 5' -59.1 NC_002794.1 + 182972 0.76 0.340102
Target:  5'- cGGCUcCUCGuuCGAgccgACGGCCGGCGCUu -3'
miRNA:   3'- cCCGA-GAGCcuGCU----UGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 182323 0.74 0.43432
Target:  5'- cGGGCggUCGGGCGGGCGGgCGA-GCg -3'
miRNA:   3'- -CCCGagAGCCUGCUUGCCgGCUgCGg -5'
10917 5' -59.1 NC_002794.1 + 182194 0.66 0.886454
Target:  5'- gGGGC-CUCGG-CGc-CGGCgucGCGCCa -3'
miRNA:   3'- -CCCGaGAGCCuGCuuGCCGgc-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 181716 0.72 0.579962
Target:  5'- cGGGUaaucgcccgUCUCGcGgaacacgcGCGAGCGGCCGGCcaGCCc -3'
miRNA:   3'- -CCCG---------AGAGC-C--------UGCUUGCCGGCUG--CGG- -5'
10917 5' -59.1 NC_002794.1 + 180926 0.69 0.70493
Target:  5'- cGGCgccgUCGGAgguCGGucucgcguccGCGGCCGACGCg -3'
miRNA:   3'- cCCGag--AGCCU---GCU----------UGCCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 180860 0.66 0.886454
Target:  5'- cGGcCUCgUCGGAgGcGGCGGauCCGGCGCg -3'
miRNA:   3'- cCC-GAG-AGCCUgC-UUGCC--GGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 180721 0.72 0.560892
Target:  5'- cGGGUUCa-GaGACGcGCGGaCGACGCCg -3'
miRNA:   3'- -CCCGAGagC-CUGCuUGCCgGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 180007 0.67 0.820474
Target:  5'- cGGGC-C-CGGccACGAcgACGGCCG-CgGCCg -3'
miRNA:   3'- -CCCGaGaGCC--UGCU--UGCCGGCuG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 179695 0.66 0.873079
Target:  5'- uGGCgg-CGG-CG-ACGGUggCGACGCCg -3'
miRNA:   3'- cCCGagaGCCuGCuUGCCG--GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 179661 0.73 0.514073
Target:  5'- cGGGCUCgcCGGACGGcacccGCGGCggCGACGgUg -3'
miRNA:   3'- -CCCGAGa-GCCUGCU-----UGCCG--GCUGCgG- -5'
10917 5' -59.1 NC_002794.1 + 179065 0.68 0.769377
Target:  5'- cGGGUUCUgGGACGAG-GGaCCaGAacccCGCCc -3'
miRNA:   3'- -CCCGAGAgCCUGCUUgCC-GG-CU----GCGG- -5'
10917 5' -59.1 NC_002794.1 + 178266 0.68 0.790377
Target:  5'- cGGGCUgaccggagacggggUCGGuCGAgcgACGGCuCGACGCg -3'
miRNA:   3'- -CCCGAg-------------AGCCuGCU---UGCCG-GCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 178172 0.69 0.751392
Target:  5'- cGGCUCgccuUCGGAgaGAagucuGCGGCCGGCugacuGCCc -3'
miRNA:   3'- cCCGAG----AGCCUg-CU-----UGCCGGCUG-----CGG- -5'
10917 5' -59.1 NC_002794.1 + 177594 0.68 0.795517
Target:  5'- aGGCUCggCGGAgccuCGGGuCGGUCGAuCGCUc -3'
miRNA:   3'- cCCGAGa-GCCU----GCUU-GCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 176588 0.7 0.657092
Target:  5'- cGGGaugugaCUCaCGGA-GAGCGGCCGGCacgGCCa -3'
miRNA:   3'- -CCC------GAGaGCCUgCUUGCCGGCUG---CGG- -5'
10917 5' -59.1 NC_002794.1 + 167334 0.67 0.836361
Target:  5'- cGGCuUCUUGGACGugUGGCUaugguucgGAUGCUu -3'
miRNA:   3'- cCCG-AGAGCCUGCuuGCCGG--------CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 166753 0.66 0.886454
Target:  5'- cGGGCUC-CGGcugacgcguauUGGAUGGCCGucgacggagaACGUCg -3'
miRNA:   3'- -CCCGAGaGCCu----------GCUUGCCGGC----------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.