miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 156950 0.7 0.657092
Target:  5'- gGGGC-CUCGGAgaUGAuUGGCCGAggaugucacgcgUGCCu -3'
miRNA:   3'- -CCCGaGAGCCU--GCUuGCCGGCU------------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 156384 0.78 0.292377
Target:  5'- cGGGgUCUUcuucuaGAGCGGCCGGCGCCg -3'
miRNA:   3'- -CCCgAGAGccug--CUUGCCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 153046 0.73 0.503981
Target:  5'- cGGGUccCUCGGGCGGACGGUccccgagCGACGgUCg -3'
miRNA:   3'- -CCCGa-GAGCCUGCUUGCCG-------GCUGC-GG- -5'
10917 5' -59.1 NC_002794.1 + 152934 0.68 0.784323
Target:  5'- cGGGCguacaucgaccuccUCUcCGGAC--AC-GCCGACGCCu -3'
miRNA:   3'- -CCCG--------------AGA-GCCUGcuUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 152820 0.66 0.8661
Target:  5'- gGGGUgccgugCGGAC--ACGGCgucagCGACGCCu -3'
miRNA:   3'- -CCCGaga---GCCUGcuUGCCG-----GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 152638 0.69 0.714363
Target:  5'- uGGGCgg-CGuuCGAGCGGCgaGACGUCg -3'
miRNA:   3'- -CCCGagaGCcuGCUUGCCGg-CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 151685 0.68 0.795517
Target:  5'- aGGGUaCUUGGGuCGccccgcCGGCCGagcGCGCCa -3'
miRNA:   3'- -CCCGaGAGCCU-GCuu----GCCGGC---UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 151613 0.68 0.760435
Target:  5'- cGGUUcCUCGG-CuGACGGCCGGCacuuggcucGCCg -3'
miRNA:   3'- cCCGA-GAGCCuGcUUGCCGGCUG---------CGG- -5'
10917 5' -59.1 NC_002794.1 + 151493 0.68 0.78171
Target:  5'- uGGCUguacaaacgcgugcgCUCGGuuCGggUGGCCugguGCGCCa -3'
miRNA:   3'- cCCGA---------------GAGCCu-GCuuGCCGGc---UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 150784 0.79 0.231912
Target:  5'- cGGGCUCgugCGacuccaggccccgcGGCGGACGGCCGA-GCCg -3'
miRNA:   3'- -CCCGAGa--GC--------------CUGCUUGCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 150585 0.76 0.347364
Target:  5'- -uGCcCUCGGGCGcccgagGACGGCCGgGCGCCg -3'
miRNA:   3'- ccCGaGAGCCUGC------UUGCCGGC-UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 150199 0.77 0.325911
Target:  5'- gGGGC-CUCacGACGAGCGGCUGcUGCCg -3'
miRNA:   3'- -CCCGaGAGc-CUGCUUGCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 150076 0.66 0.865392
Target:  5'- -cGCUCUggccuuccugcgcUGGGCGGAgcgugaGGCCGgaGCGCCg -3'
miRNA:   3'- ccCGAGA-------------GCCUGCUUg-----CCGGC--UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 149838 0.66 0.875817
Target:  5'- cGGGCgg--GGACGAggacggggacgaggaGCGGCCGccCGCUc -3'
miRNA:   3'- -CCCGagagCCUGCU---------------UGCCGGCu-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 149737 0.7 0.695441
Target:  5'- cGGCgugC-CGGugGAGCGGCgGGacCGCUg -3'
miRNA:   3'- cCCGa--GaGCCugCUUGCCGgCU--GCGG- -5'
10917 5' -59.1 NC_002794.1 + 149321 0.7 0.695441
Target:  5'- aGGGCaagUCggacCGGAcCGAAcCGGCCGGgGUCg -3'
miRNA:   3'- -CCCG---AGa---GCCU-GCUU-GCCGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 148561 0.75 0.400433
Target:  5'- cGGCUCuuucugcUCGGACuGAucugcgagcACGGCCGGcCGCCg -3'
miRNA:   3'- cCCGAG-------AGCCUG-CU---------UGCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 148154 0.67 0.813123
Target:  5'- aGGGCggUCGcGACGGaaggagggggucgcgACGGaaggaggggggucuCCGGCGCCg -3'
miRNA:   3'- -CCCGagAGC-CUGCU---------------UGCC--------------GGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 147241 0.67 0.828497
Target:  5'- uGGGCccgagagcacUC-CGGGCagacgcucGAGCuGCCGugGCCg -3'
miRNA:   3'- -CCCG----------AGaGCCUG--------CUUGcCGGCugCGG- -5'
10917 5' -59.1 NC_002794.1 + 147077 0.7 0.651304
Target:  5'- cGGGCgcccgguccaaGGACGAAgGcGUCGGCGCCc -3'
miRNA:   3'- -CCCGagag-------CCUGCUUgC-CGGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.