miRNA display CGI


Results 41 - 60 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 166753 0.66 0.886454
Target:  5'- cGGGCUC-CGGcugacgcguauUGGAUGGCCGucgacggagaACGUCg -3'
miRNA:   3'- -CCCGAGaGCCu----------GCUUGCCGGC----------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 141754 0.66 0.886454
Target:  5'- -cGUaCUUGGACGAGCGGuUCGAUuCCg -3'
miRNA:   3'- ccCGaGAGCCUGCUUGCC-GGCUGcGG- -5'
10917 5' -59.1 NC_002794.1 + 3358 0.65 0.892214
Target:  5'- gGGGUggccgauUCUgGGAaaaagcgGAACGaGCCGGcCGCCu -3'
miRNA:   3'- -CCCG-------AGAgCCUg------CUUGC-CGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 90704 0.66 0.886454
Target:  5'- cGGCa---GGACGAAUGGUgCGACGUg -3'
miRNA:   3'- cCCGagagCCUGCUUGCCG-GCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 192813 0.66 0.886454
Target:  5'- -uGCUCcacGugGAACaGGCCGGuCGCCa -3'
miRNA:   3'- ccCGAGagcCugCUUG-CCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 90845 0.66 0.885804
Target:  5'- aGGGCggCgugCuGACGAAagucacuuccaugUGGCCGGcCGCCu -3'
miRNA:   3'- -CCCGa-Ga--GcCUGCUU-------------GCCGGCU-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 147024 0.66 0.885152
Target:  5'- cGGcGCUCggucuaaGGACGAagccgucgGCGGCCGGucuaaggacggaGCCg -3'
miRNA:   3'- -CC-CGAGag-----CCUGCU--------UGCCGGCUg-----------CGG- -5'
10917 5' -59.1 NC_002794.1 + 109536 0.66 0.879195
Target:  5'- cGGCg-UCGGGcCGGGCGGaCCGGucuaccuCGCCc -3'
miRNA:   3'- cCCGagAGCCU-GCUUGCC-GGCU-------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 146315 0.66 0.876496
Target:  5'- cGGGCUCgccgacgcgcggCGGAuuCGAccccgucgucgaucGCGGCgGcCGCCc -3'
miRNA:   3'- -CCCGAGa-----------GCCU--GCU--------------UGCCGgCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 105764 0.66 0.879865
Target:  5'- -cGUUCaUCGGGguCGGugGGCCG-CGUCg -3'
miRNA:   3'- ccCGAG-AGCCU--GCUugCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 106987 0.66 0.879865
Target:  5'- cGGCacggCGGugGcggcGCuGGCCGACGCg -3'
miRNA:   3'- cCCGaga-GCCugCu---UG-CCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 21916 0.66 0.879865
Target:  5'- uGGCgg-CGGAgaCGAcggcgGCGGCgCGGCGCUc -3'
miRNA:   3'- cCCGagaGCCU--GCU-----UGCCG-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 17444 0.66 0.879865
Target:  5'- cGGCgCUCGGGCccGCGaCCGAgGUCg -3'
miRNA:   3'- cCCGaGAGCCUGcuUGCcGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 48139 0.66 0.879865
Target:  5'- aGGGCUCgaagCccucGACGA--GGCagCGGCGCCg -3'
miRNA:   3'- -CCCGAGa---Gc---CUGCUugCCG--GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 90936 0.66 0.879865
Target:  5'- cGGCgacgUGGGCGGGCugugcGCCGAgGCCc -3'
miRNA:   3'- cCCGaga-GCCUGCUUGc----CGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 49600 0.66 0.879865
Target:  5'- -cGCgaUCGG-CG-ACGGCgGGCGCCg -3'
miRNA:   3'- ccCGagAGCCuGCuUGCCGgCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 92482 0.66 0.879865
Target:  5'- cGGGC-CUCaaccggugcguGGACGAgGCGGCCaugGCCc -3'
miRNA:   3'- -CCCGaGAG-----------CCUGCU-UGCCGGcugCGG- -5'
10917 5' -59.1 NC_002794.1 + 97080 0.66 0.879865
Target:  5'- -cGCUUcgcgCGGACGAucacguGCGcGCCcuacGACGCCa -3'
miRNA:   3'- ccCGAGa---GCCUGCU------UGC-CGG----CUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 100800 0.66 0.882524
Target:  5'- cGGCcgCUucugcgccuacgugcCGGGCGGcgGgGGCCGGCaGCCg -3'
miRNA:   3'- cCCGa-GA---------------GCCUGCU--UgCCGGCUG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 142069 0.66 0.882524
Target:  5'- cGGGCUcCUCGGuCaAACcguGGCCGGaauuuccgaacaagcCGCCu -3'
miRNA:   3'- -CCCGA-GAGCCuGcUUG---CCGGCU---------------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.