miRNA display CGI


Results 61 - 80 of 326 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10917 5' -59.1 NC_002794.1 + 92482 0.66 0.879865
Target:  5'- cGGGC-CUCaaccggugcguGGACGAgGCGGCCaugGCCc -3'
miRNA:   3'- -CCCGaGAG-----------CCUGCU-UGCCGGcugCGG- -5'
10917 5' -59.1 NC_002794.1 + 49600 0.66 0.879865
Target:  5'- -cGCgaUCGG-CG-ACGGCgGGCGCCg -3'
miRNA:   3'- ccCGagAGCCuGCuUGCCGgCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 144969 0.66 0.873079
Target:  5'- cGGCgcCUC-GACGGugucGCGaCCGGCGCCg -3'
miRNA:   3'- cCCGa-GAGcCUGCU----UGCcGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 14640 0.66 0.873079
Target:  5'- cGGGCa--CGGA--GAC-GCCGGCGCCg -3'
miRNA:   3'- -CCCGagaGCCUgcUUGcCGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 99787 0.66 0.873079
Target:  5'- cGGCg-UCGacuACGAGCGcgcgccgcgggcGCCGGCGCCg -3'
miRNA:   3'- cCCGagAGCc--UGCUUGC------------CGGCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 184058 0.66 0.873079
Target:  5'- cGGGC-CgCGG-CGaAGCGGCaCG-CGCCc -3'
miRNA:   3'- -CCCGaGaGCCuGC-UUGCCG-GCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 179695 0.66 0.873079
Target:  5'- uGGCgg-CGG-CG-ACGGUggCGACGCCg -3'
miRNA:   3'- cCCGagaGCCuGCuUGCCG--GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 112556 0.66 0.873079
Target:  5'- gGGGCUCgccgcCGGcCaccCGGCCGcucuccagcuGCGCCa -3'
miRNA:   3'- -CCCGAGa----GCCuGcuuGCCGGC----------UGCGG- -5'
10917 5' -59.1 NC_002794.1 + 59454 0.66 0.873079
Target:  5'- cGGGCUCUCcGACGAcau-CCGcCGCUa -3'
miRNA:   3'- -CCCGAGAGcCUGCUugccGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 70053 0.66 0.873079
Target:  5'- aGGUcgCcCGGuCGGGCGGCCG-CaGCCg -3'
miRNA:   3'- cCCGa-GaGCCuGCUUGCCGGCuG-CGG- -5'
10917 5' -59.1 NC_002794.1 + 37357 0.66 0.873766
Target:  5'- cGGGCcccagguagucgaagCUCGGGCGca-GGCCGucgaaguCGCUg -3'
miRNA:   3'- -CCCGa--------------GAGCCUGCuugCCGGCu------GCGG- -5'
10917 5' -59.1 NC_002794.1 + 149838 0.66 0.875817
Target:  5'- cGGGCgg--GGACGAggacggggacgaggaGCGGCCGccCGCUc -3'
miRNA:   3'- -CCCGagagCCUGCU---------------UGCCGGCu-GCGG- -5'
10917 5' -59.1 NC_002794.1 + 90936 0.66 0.879865
Target:  5'- cGGCgacgUGGGCGGGCugugcGCCGAgGCCc -3'
miRNA:   3'- cCCGaga-GCCUGCUUGc----CGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 48139 0.66 0.879865
Target:  5'- aGGGCUCgaagCccucGACGA--GGCagCGGCGCCg -3'
miRNA:   3'- -CCCGAGa---Gc---CUGCUugCCG--GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 17444 0.66 0.879865
Target:  5'- cGGCgCUCGGGCccGCGaCCGAgGUCg -3'
miRNA:   3'- cCCGaGAGCCUGcuUGCcGGCUgCGG- -5'
10917 5' -59.1 NC_002794.1 + 21916 0.66 0.879865
Target:  5'- uGGCgg-CGGAgaCGAcggcgGCGGCgCGGCGCUc -3'
miRNA:   3'- cCCGagaGCCU--GCU-----UGCCG-GCUGCGG- -5'
10917 5' -59.1 NC_002794.1 + 106987 0.66 0.879865
Target:  5'- cGGCacggCGGugGcggcGCuGGCCGACGCg -3'
miRNA:   3'- cCCGaga-GCCugCu---UG-CCGGCUGCGg -5'
10917 5' -59.1 NC_002794.1 + 105764 0.66 0.879865
Target:  5'- -cGUUCaUCGGGguCGGugGGCCG-CGUCg -3'
miRNA:   3'- ccCGAG-AGCCU--GCUugCCGGCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 146315 0.66 0.876496
Target:  5'- cGGGCUCgccgacgcgcggCGGAuuCGAccccgucgucgaucGCGGCgGcCGCCc -3'
miRNA:   3'- -CCCGAGa-----------GCCU--GCU--------------UGCCGgCuGCGG- -5'
10917 5' -59.1 NC_002794.1 + 109536 0.66 0.879195
Target:  5'- cGGCg-UCGGGcCGGGCGGaCCGGucuaccuCGCCc -3'
miRNA:   3'- cCCGagAGCCU-GCUUGCC-GGCU-------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.