miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10918 3' -57.5 NC_002794.1 + 131752 0.66 0.898054
Target:  5'- aCGCgACCGGCGCGUcugcacgcGGucGACg- -3'
miRNA:   3'- -GCGgUGGCCGCGCAcua-----CCuuCUGaa -5'
10918 3' -57.5 NC_002794.1 + 94593 0.66 0.897418
Target:  5'- cCGCCcCCGGCGCc-GGUGGcggcggcggggagGAGACg- -3'
miRNA:   3'- -GCGGuGGCCGCGcaCUACC-------------UUCUGaa -5'
10918 3' -57.5 NC_002794.1 + 104748 0.66 0.891594
Target:  5'- aCGCCgggcaGCUGGUGcCGUGcGUGGAGGAg-- -3'
miRNA:   3'- -GCGG-----UGGCCGC-GCAC-UACCUUCUgaa -5'
10918 3' -57.5 NC_002794.1 + 98069 0.66 0.891594
Target:  5'- uGCCAuCUGGCGCu---UGGGAGACc- -3'
miRNA:   3'- gCGGU-GGCCGCGcacuACCUUCUGaa -5'
10918 3' -57.5 NC_002794.1 + 46454 0.66 0.889614
Target:  5'- uCGCCGCgcgugugugccgugUGGUGUGUGugaaggGGAAGGCUc -3'
miRNA:   3'- -GCGGUG--------------GCCGCGCACua----CCUUCUGAa -5'
10918 3' -57.5 NC_002794.1 + 46583 0.66 0.889614
Target:  5'- cCGCCGgCGGCGCGgcggcucgcucacGGggGGCg- -3'
miRNA:   3'- -GCGGUgGCCGCGCacua---------CCuuCUGaa -5'
10918 3' -57.5 NC_002794.1 + 88318 0.66 0.884916
Target:  5'- gCGCCGgCGGCGaCGaccgcGGUGGggGAg-- -3'
miRNA:   3'- -GCGGUgGCCGC-GCa----CUACCuuCUgaa -5'
10918 3' -57.5 NC_002794.1 + 3715 0.66 0.884916
Target:  5'- uGCUGCCGGCGCGgucGcgGcGGAGcCUg -3'
miRNA:   3'- gCGGUGGCCGCGCa--CuaC-CUUCuGAa -5'
10918 3' -57.5 NC_002794.1 + 50943 0.66 0.884236
Target:  5'- cCGCCGCCGGCaccaaccGCGccaaGGUGGugcuGGACc- -3'
miRNA:   3'- -GCGGUGGCCG-------CGCa---CUACCu---UCUGaa -5'
10918 3' -57.5 NC_002794.1 + 56175 0.66 0.878023
Target:  5'- aGCCGCCGGC-CGUGccGGAcAGGu-- -3'
miRNA:   3'- gCGGUGGCCGcGCACuaCCU-UCUgaa -5'
10918 3' -57.5 NC_002794.1 + 193239 0.66 0.870197
Target:  5'- gGCCGCCGGCGCGcguccccagcaaaUGA-GGA--GCUc -3'
miRNA:   3'- gCGGUGGCCGCGC-------------ACUaCCUucUGAa -5'
10918 3' -57.5 NC_002794.1 + 73543 0.66 0.863608
Target:  5'- cCGUCGCCGuGCGCGUGGcguUGGcccuGGCc- -3'
miRNA:   3'- -GCGGUGGC-CGCGCACU---ACCuu--CUGaa -5'
10918 3' -57.5 NC_002794.1 + 151134 0.66 0.863608
Target:  5'- aCGUCgGCCGGCGCc-GccGGAGGGCUa -3'
miRNA:   3'- -GCGG-UGGCCGCGcaCuaCCUUCUGAa -5'
10918 3' -57.5 NC_002794.1 + 88643 0.67 0.856098
Target:  5'- gCGCCGCCgggcGGCGCGcGAcggGGgcGGCg- -3'
miRNA:   3'- -GCGGUGG----CCGCGCaCUa--CCuuCUGaa -5'
10918 3' -57.5 NC_002794.1 + 52122 0.67 0.848393
Target:  5'- uCGcCCGCCGGaCGCGccGccGGggGGCUc -3'
miRNA:   3'- -GC-GGUGGCC-GCGCa-CuaCCuuCUGAa -5'
10918 3' -57.5 NC_002794.1 + 133349 0.67 0.832423
Target:  5'- gCGCCGCCGGCGCcuccgcccaccGUGAc-GAAGAg-- -3'
miRNA:   3'- -GCGGUGGCCGCG-----------CACUacCUUCUgaa -5'
10918 3' -57.5 NC_002794.1 + 19663 0.67 0.824172
Target:  5'- aCGCUguACgGGUgGCG-GAUGGAAGGCUc -3'
miRNA:   3'- -GCGG--UGgCCG-CGCaCUACCUUCUGAa -5'
10918 3' -57.5 NC_002794.1 + 8098 0.68 0.815753
Target:  5'- aCGCCGCCGGCGCc-GGUcgccucgaccccGGAGGAa-- -3'
miRNA:   3'- -GCGGUGGCCGCGcaCUA------------CCUUCUgaa -5'
10918 3' -57.5 NC_002794.1 + 165112 0.69 0.762154
Target:  5'- cCGCgGCUGGCGCGcUGGaggaucUGGAAGcGCUg -3'
miRNA:   3'- -GCGgUGGCCGCGC-ACU------ACCUUC-UGAa -5'
10918 3' -57.5 NC_002794.1 + 160305 0.69 0.733745
Target:  5'- gCGCuCGCgCGcGCGCGUGGUGGcccAGGCg- -3'
miRNA:   3'- -GCG-GUG-GC-CGCGCACUACCu--UCUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.