Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10918 | 3' | -57.5 | NC_002794.1 | + | 54200 | 0.73 | 0.535561 |
Target: 5'- gGCCGCCGGCGgGUcGAgcGAAGACg- -3' miRNA: 3'- gCGGUGGCCGCgCA-CUacCUUCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 65200 | 0.73 | 0.539452 |
Target: 5'- cCGCCGCCGGcCGCGgGcuccgccgcggccucGUGGGAGGCg- -3' miRNA: 3'- -GCGGUGGCC-GCGCaC---------------UACCUUCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 124561 | 0.71 | 0.60476 |
Target: 5'- aGCCGCCGGCGCGcuc-GGgcGGCg- -3' miRNA: 3'- gCGGUGGCCGCGCacuaCCuuCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 195600 | 0.71 | 0.644868 |
Target: 5'- uGCCGCCGcGCGCGcgGAcGcGAGGACg- -3' miRNA: 3'- gCGGUGGC-CGCGCa-CUaC-CUUCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 58195 | 0.7 | 0.668888 |
Target: 5'- gCGCCGCUGGUGCGgacgcacgguccaguUGAggcGGAAGGCc- -3' miRNA: 3'- -GCGGUGGCCGCGC---------------ACUa--CCUUCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 182781 | 0.7 | 0.674872 |
Target: 5'- gCGCgACCGGCGCGaagucccGGggGACg- -3' miRNA: 3'- -GCGgUGGCCGCGCacua---CCuuCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 58284 | 0.7 | 0.704573 |
Target: 5'- uCGCCGCCGGgGCcggaGUGcgGGGAGcCg- -3' miRNA: 3'- -GCGGUGGCCgCG----CACuaCCUUCuGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 151966 | 0.69 | 0.714368 |
Target: 5'- cCGUCGCCGGCGUcucGUGA-GGAGcGGCg- -3' miRNA: 3'- -GCGGUGGCCGCG---CACUaCCUU-CUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 155341 | 0.69 | 0.714368 |
Target: 5'- gGCCGCCGaCGCGccGAcGGGAGACg- -3' miRNA: 3'- gCGGUGGCcGCGCa-CUaCCUUCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 160305 | 0.69 | 0.733745 |
Target: 5'- gCGCuCGCgCGcGCGCGUGGUGGcccAGGCg- -3' miRNA: 3'- -GCG-GUG-GC-CGCGCACUACCu--UCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 165112 | 0.69 | 0.762154 |
Target: 5'- cCGCgGCUGGCGCGcUGGaggaucUGGAAGcGCUg -3' miRNA: 3'- -GCGgUGGCCGCGC-ACU------ACCUUC-UGAa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 8098 | 0.68 | 0.815753 |
Target: 5'- aCGCCGCCGGCGCc-GGUcgccucgaccccGGAGGAa-- -3' miRNA: 3'- -GCGGUGGCCGCGcaCUA------------CCUUCUgaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 19663 | 0.67 | 0.824172 |
Target: 5'- aCGCUguACgGGUgGCG-GAUGGAAGGCUc -3' miRNA: 3'- -GCGG--UGgCCG-CGCaCUACCUUCUGAa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 133349 | 0.67 | 0.832423 |
Target: 5'- gCGCCGCCGGCGCcuccgcccaccGUGAc-GAAGAg-- -3' miRNA: 3'- -GCGGUGGCCGCG-----------CACUacCUUCUgaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 52122 | 0.67 | 0.848393 |
Target: 5'- uCGcCCGCCGGaCGCGccGccGGggGGCUc -3' miRNA: 3'- -GC-GGUGGCC-GCGCa-CuaCCuuCUGAa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 88643 | 0.67 | 0.856098 |
Target: 5'- gCGCCGCCgggcGGCGCGcGAcggGGgcGGCg- -3' miRNA: 3'- -GCGGUGG----CCGCGCaCUa--CCuuCUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 73543 | 0.66 | 0.863608 |
Target: 5'- cCGUCGCCGuGCGCGUGGcguUGGcccuGGCc- -3' miRNA: 3'- -GCGGUGGC-CGCGCACU---ACCuu--CUGaa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 151134 | 0.66 | 0.863608 |
Target: 5'- aCGUCgGCCGGCGCc-GccGGAGGGCUa -3' miRNA: 3'- -GCGG-UGGCCGCGcaCuaCCUUCUGAa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 193239 | 0.66 | 0.870197 |
Target: 5'- gGCCGCCGGCGCGcguccccagcaaaUGA-GGA--GCUc -3' miRNA: 3'- gCGGUGGCCGCGC-------------ACUaCCUucUGAa -5' |
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10918 | 3' | -57.5 | NC_002794.1 | + | 56175 | 0.66 | 0.878023 |
Target: 5'- aGCCGCCGGC-CGUGccGGAcAGGu-- -3' miRNA: 3'- gCGGUGGCCGcGCACuaCCU-UCUgaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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