Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10918 | 3' | -57.5 | NC_002794.1 | + | 50943 | 0.66 | 0.884236 |
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Target: 5'- cCGCCGCCGGCaccaaccGCGccaaGGUGGugcuGGACc- -3' miRNA: 3'- -GCGGUGGCCG-------CGCa---CUACCu---UCUGaa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 88318 | 0.66 | 0.884916 |
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Target: 5'- gCGCCGgCGGCGaCGaccgcGGUGGggGAg-- -3' miRNA: 3'- -GCGGUgGCCGC-GCa----CUACCuuCUgaa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 3715 | 0.66 | 0.884916 |
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Target: 5'- uGCUGCCGGCGCGgucGcgGcGGAGcCUg -3' miRNA: 3'- gCGGUGGCCGCGCa--CuaC-CUUCuGAa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 46454 | 0.66 | 0.889614 |
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Target: 5'- uCGCCGCgcgugugugccgugUGGUGUGUGugaaggGGAAGGCUc -3' miRNA: 3'- -GCGGUG--------------GCCGCGCACua----CCUUCUGAa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 46583 | 0.66 | 0.889614 |
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Target: 5'- cCGCCGgCGGCGCGgcggcucgcucacGGggGGCg- -3' miRNA: 3'- -GCGGUgGCCGCGCacua---------CCuuCUGaa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 98069 | 0.66 | 0.891594 |
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Target: 5'- uGCCAuCUGGCGCu---UGGGAGACc- -3' miRNA: 3'- gCGGU-GGCCGCGcacuACCUUCUGaa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 104748 | 0.66 | 0.891594 |
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Target: 5'- aCGCCgggcaGCUGGUGcCGUGcGUGGAGGAg-- -3' miRNA: 3'- -GCGG-----UGGCCGC-GCAC-UACCUUCUgaa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 94593 | 0.66 | 0.897418 |
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Target: 5'- cCGCCcCCGGCGCc-GGUGGcggcggcggggagGAGACg- -3' miRNA: 3'- -GCGGuGGCCGCGcaCUACC-------------UUCUGaa -5' |
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| 10918 | 3' | -57.5 | NC_002794.1 | + | 131752 | 0.66 | 0.898054 |
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Target: 5'- aCGCgACCGGCGCGUcugcacgcGGucGACg- -3' miRNA: 3'- -GCGgUGGCCGCGCAcua-----CCuuCUGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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